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13_1_40cm_2_scaffold_6132

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_6132_1
RLO_Entotheonella_69_37, Entotheonella, Bacteria

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1..282
DNA (282bp) protein (94aa)
hypothetical protein; K05524 ferredoxin Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
4Fe-4S ferredoxin, iron-sulfur binding domain protein id=2313762 bin=GWA2_Elusimicrobia_66_18 species=sediment metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
fdxA; ferredoxin (4Fe-4S cluster-containing protein)
13_1_40cm_2_scaffold_6132_2
unknown

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comp(432..1196)
DNA (765bp) protein (255aa)

This feature has no annotations

13_1_40cm_2_scaffold_6132_3
RBG_16_Planctomycetes_64_10_curated, Planctomycetia, Planctomycetes, Bacteria

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comp(1216..1629)
DNA (414bp) protein (138aa)
hypothetical protein; K01737 6-pyruvoyl tetrahydrobiopterin synthase [EC:4.2.3.12] Tax=RBG_16_Planctomycetes_64_10_curated
6-pyruvoyl tetrahydrobiopterin synthase n=1 Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B5EA6F
hypothetical protein
13_1_40cm_2_scaffold_6132_4
R_Acidobacteria_67_28, Acidobacteria, Bacteria

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comp(1643..2746)
DNA (1104bp) protein (368aa)
A/G-specific adenine glycosylase n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9EQ53_SORC5 id=5224798 bin=16ft_combo_ws3_JS1 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade rbh
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
hypothetical protein
13_1_40cm_2_scaffold_6132_5
RLO_PLX_64_10, Bacteria

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2801..3664
DNA (864bp) protein (288aa)
radical SAM domain-containing protein Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
Radical SAM domain protein id=1742856 bin=GWD2_Deltaproteobacteria_55_8 species=Pirellula staleyi genus=Pirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
radical SAM domain-containing protein
13_1_40cm_2_scaffold_6132_6
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(3692..4813)
DNA (1122bp) protein (374aa)
Putative hydrolase n=1 Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8CGQ2_MYXFH
Predicted membrane-bound metal-dependent hydrolase {ECO:0000313|EMBL:CDM65558.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methyla
putative hydrolase
13_1_40cm_2_scaffold_6132_7
Tumebacillus flagellatus, Tumebacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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4842..5975
DNA (1134bp) protein (378aa)
Uncharacterized protein {ECO:0000313|EMBL:KEO82426.1}; TaxID=1157490 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Tumebacillus.;" source="Tumebacillus flagellatus.;"
YdjC id=2262036 bin=GWB2_Chloroflexi_54_36 species=Bacillus cereus genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWB2_Chloroflexi_54_36 organism_group=Chloroflexi organism_desc=a81
ydjC; hypothetical protein
13_1_40cm_2_scaffold_6132_8
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

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comp(5906..7732)
DNA (1827bp) protein (609aa)
carbon starvation protein CstA; K06200 carbon starvation protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
carbon starvation protein CstA; K06200 carbon starvation protein id=14426070 bin=bin1_lowGC species=Desulfotomaculum nigrificans genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin1_lowGC organism_group=Unknown_CP
cstA; carbon starvation protein CstA
13_1_40cm_2_scaffold_6132_9
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7819..9447
DNA (1629bp) protein (543aa)
crotonase (EC:4.2.1.17)
Crotonase {ECO:0000313|EMBL:AGP34390.1}; EC=4.2.1.17 {ECO:0000313|EMBL:AGP34390.1};; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; So
Crotonase n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XRA8_SORCE
13_1_40cm_2_scaffold_6132_10
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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9447..10853
DNA (1407bp) protein (469aa)
Benzoyl-CoA oxygenase n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XPE9_SORCE rbh
benzoyl-CoA oxygenase
Benzoyl-CoA oxygenase {ECO:0000313|EMBL:AGP34389.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cel
13_1_40cm_2_scaffold_6132_11
unknown

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13439..13717
DNA (279bp) protein (93aa)

This feature has no annotations

13_1_40cm_2_scaffold_6132_12
unknown

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13772..13933
DNA (162bp) protein (54aa)

This feature has no annotations

13_1_40cm_2_scaffold_6132_13
unknown

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comp(14391..14978)
DNA (588bp) protein (196aa)

This feature has no annotations

13_1_40cm_2_scaffold_6132_14
Myxococcus stipitatus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(14975..15559)
DNA (585bp) protein (195aa)
RNA polymerase, sigma-24 subunit, ECF subfamily id=2260595 bin=GWB2_CP_45_9 species=Dictyoglomus turgidum genus=Dictyoglomus taxon_order=Dictyoglomales taxon_class=Dictyoglomia phylum=Dictyoglomi tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
RNA polymerase sigma-E factor
RNA polymerase sigma-E factor {ECO:0000313|EMBL:AGC48640.1}; TaxID=1278073 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="
13_1_40cm_2_scaffold_6132_15
R_Nitrospirae_62_14, Nitrospirae, Bacteria

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comp(15733..16569)
DNA (837bp) protein (279aa)
gapD; succinate semialdehyde dehydrogenase (EC:1.2.1.16) Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
gapD; succinate semialdehyde dehydrogenase (EC:1.2.1.16)
Succinate semialdehyde dehydrogenase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P812_9BACT
Displaying 15 items

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