ggKbase home page

13_1_40cm_2_scaffold_353

Search features with annotation key words

Displaying 20 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_353_1
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(1..822)
DNA (822bp) protein (274aa)
lysyl-tRNA synthetase; K04567 lysyl-tRNA synthetase, class II [EC:6.1.1.6] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
lysS; lysine--tRNA ligase (EC:6.1.1.6)
Lysine--tRNA ligase n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F9C4_ACIC5
13_1_40cm_2_scaffold_353_2
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

comp(913..1224)
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Actinomadura madurae LIID-AJ290 RepID=U2PN08_9ACTO
ycdJ; arylesterase Tax=RBG_16_Euryarchaeota_67_27_curated
hypothetical protein
13_1_40cm_2_scaffold_353_3
GWA2_Elusimicrobia_69_24_curated, Elusimicrobia, Bacteria

Not on your lists

1274..1546
DNA (273bp) protein (91aa)
YCII-related protein id=3690055 bin=GWA2_Elusimicrobia_69_24 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
YciI-like protein; K09780 hypothetical protein Tax=GWA2_Elusimicrobia_69_24_curated
YciI-like protein
13_1_40cm_2_scaffold_353_4
unknown

Not on your lists

1644..2438
DNA (795bp) protein (265aa)

This feature has no annotations

13_1_40cm_2_scaffold_353_5

Not on your lists

2457..4811
DNA (2355bp) protein (785aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QKB6_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI07683.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
13_1_40cm_2_scaffold_353_6
unknown

Not on your lists

4918..5643
DNA (726bp) protein (242aa)

This feature has no annotations

13_1_40cm_2_scaffold_353_7
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

5799..6443
DNA (645bp) protein (215aa)
RNA polymerase sigma factor n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F3F9_ACIC5
RNA polymerase sigma factor
RNA polymerase sigma factor {ECO:0000313|EMBL:ACO33209.1}; TaxID=240015 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium capsulatum (stra
13_1_40cm_2_scaffold_353_8
unknown

Not on your lists

6545..7204
DNA (660bp) protein (220aa)

This feature has no annotations

13_1_40cm_2_scaffold_353_9
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

7206..8087
DNA (882bp) protein (294aa)
hypothetical protein n=1 Tax=Nocardiopsis baichengensis RepID=UPI00037D1576
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
hypothetical protein
13_1_40cm_2_scaffold_353_10
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

8176..8703
DNA (528bp) protein (176aa)
shikimate kinase; K00891 shikimate kinase [EC:2.7.1.71] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
shikimate kinase (EC:2.7.1.71)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000375E787
13_1_40cm_2_scaffold_353_11
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

8832..9575
DNA (744bp) protein (248aa)
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
13_1_40cm_2_scaffold_353_12
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(9732..10481)
DNA (750bp) protein (250aa)
Transcriptional regulator, XRE family n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IRT4_KORVE
XRE family transcriptional regulator
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ABF40416.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter ver
13_1_40cm_2_scaffold_353_13
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

10815..11417
DNA (603bp) protein (201aa)
Metal dependent phosphohydrolase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IRT6_KORVE
metal dependent phosphohydrolase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
metal dependent phosphohydrolase
13_1_40cm_2_scaffold_353_14
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

11512..12795
DNA (1284bp) protein (428aa)
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1); K03526 (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
gcpE; 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase; K03526 (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1] id=12554811 bin=CNBR_ACIDO species=unknown genus=Methylovorus taxon_order=Methylophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
13_1_40cm_2_scaffold_353_15
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

12792..13094
DNA (303bp) protein (101aa)
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C (EC:6.3.5.-); K02435 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPHIGHO2_01_FULL_Acidobac
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IUE6_KORVE
aspartyl/glutamyl-tRNA amidotransferase subunit C
13_1_40cm_2_scaffold_353_16
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

13091..14527
DNA (1437bp) protein (479aa)
gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A (EC:6.3.5.-); K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPLOWO2_12_FULL_Acidobacteri
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=GATA_KORVE
gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A
13_1_40cm_2_scaffold_353_17
unknown

Not on your lists

15016..15234
DNA (219bp) protein (73aa)

This feature has no annotations

13_1_40cm_2_scaffold_353_18
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(15328..16371)
DNA (1044bp) protein (348aa)
beta-lactamase-like; K01467 beta-lactamase [EC:3.5.2.6] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
Beta-lactamase-like protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IQZ0_KORVE
beta-lactamase-like protein
13_1_40cm_2_scaffold_353_19
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

16580..17605
DNA (1026bp) protein (342aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QJT9_9ZZZZ
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
hypothetical protein
13_1_40cm_2_scaffold_353_20
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(17642..20284)
DNA (2643bp) protein (881aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacte
Signal transduction histidine kinase, nitrogen specific, NtrB n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IQS3_KORVE
signal transduction histidine kinase, nitrogen specific, NtrB
Displaying 20 items

View Taxonomy