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13_1_40cm_2_scaffold_89

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Displaying items 1-30 of 53 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_89_1
RLO_RIF05_58_11, RIF5, Bacteria

Not on your lists

comp(1..276)
DNA (276bp) protein (92aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ISJ7_KORVE
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_RIF05_58_11_curated
hypothetical protein
13_1_40cm_2_scaffold_89_2
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(651..2141)
DNA (1491bp) protein (497aa)
Diguanylate cyclase n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FC47_CONWI
diguanylate cyclase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
diguanylate cyclase
13_1_40cm_2_scaffold_89_3
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(2138..2824)
DNA (687bp) protein (229aa)
1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase n=1 Tax=Desulfitobacterium metallireducens DSM 15288 RepID=G6GKT7_9FIRM
1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; K06898 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate carboxylase
13_1_40cm_2_scaffold_89_4
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(2821..3810)
DNA (990bp) protein (330aa)
tRNA-dihydrouridine synthase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3V7_GEMAT
putative tRNA-dihydrouridine synthase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
TIM-barrel protein, nifR3 family
13_1_40cm_2_scaffold_89_5
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

3892..4344
DNA (453bp) protein (151aa)
Phosphotransferase system enzyme IIA component n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3V8_GEMAT
fruA; phosphotransferase system enzyme IIA component
Phosphotransferase system enzyme IIA component {ECO:0000313|EMBL:BAH38783.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimona
13_1_40cm_2_scaffold_89_6
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(4341..5600)
DNA (1260bp) protein (420aa)
Putative uncharacterized protein n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LE55_CHLTF
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein
13_1_40cm_2_scaffold_89_7
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(5906..7459)
DNA (1554bp) protein (518aa)
guaA; GMP synthase (EC:6.3.5.2); K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
GMP synthase [glutamine-hydrolyzing] n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=GUAA_GEMAT
GMP synthase [glutamine-hydrolyzing]
13_1_40cm_2_scaffold_89_8
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(7456..8709)
DNA (1254bp) protein (418aa)
lysA; diaminopimelate decarboxylase (EC:4.1.1.20); K01586 diaminopimelate decarboxylase [EC:4.1.1.20] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
diaminopimelate decarboxylase n=1 Tax=Thermodesulfobacterium thermophilum RepID=UPI0003B5F8FF
diaminopimelate decarboxylase
13_1_40cm_2_scaffold_89_9
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists


comp(8691..10031)
DNA (1341bp) protein (447aa)
proS; prolyl-tRNA synthetase (EC:6.1.1.15); K01881 prolyl-tRNA synthetase [EC:6.1.1.15] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Proline--tRNA ligase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3X0_GEMAT
Prolyl-tRNA synthetase
13_1_40cm_2_scaffold_89_10
Myxococcus xanthus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10156..10515)
DNA (360bp) protein (120aa)
Putative uncharacterized protein n=1 Tax=Myxococcus xanthus (strain DK 1622) RepID=Q1DG78_MYXXD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF86884.1}; TaxID=246197 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococ
13_1_40cm_2_scaffold_89_11
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists


comp(10503..11792)
DNA (1290bp) protein (430aa)
hisS; histidyl-tRNA synthetase (EC:6.1.1.21); K01892 histidyl-tRNA synthetase [EC:6.1.1.21] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Histidyl-tRNA synthetase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3X1_GEMAT
Histidyl-tRNA synthetase
13_1_40cm_2_scaffold_89_12
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(11802..12866)
DNA (1065bp) protein (355aa)
folC; folylpolyglutamate synthase (EC:6.3.2.17); K11754 dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] Tax=RBG_16_Gemmatimonadetes_66_8_curated
folC; folylpolyglutamate synthase (EC:6.3.2.17)
Folylpolyglutamate synthase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3X2_GEMAT
13_1_40cm_2_scaffold_89_13
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(13073..13930)
DNA (858bp) protein (286aa)
accD; acetyl-CoA carboxylase carboxyl transferase subunit beta (EC:6.4.1.2); K01963 acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11
accD; acetyl-CoA carboxylase carboxyl transferase subunit beta (EC:6.4.1.2)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3X3_GEMAT
13_1_40cm_2_scaffold_89_14
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(14012..15259)
DNA (1248bp) protein (416aa)
Rod shape determining protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3X4_GEMAT
mrdB; rod shape determining protein; K05837 rod shape determining protein RodA Tax=RBG_16_Gemmatimonadetes_66_8_curated
rod shape-determining protein RodA
13_1_40cm_2_scaffold_89_15
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(15231..17162)
DNA (1932bp) protein (644aa)
Penicillin-binding protein 2 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3X5_GEMAT
mrdA; penicillin-binding protein 2; K05515 penicillin-binding protein 2 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
mrdA; penicillin-binding protein 2
13_1_40cm_2_scaffold_89_16
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(17159..17656)
DNA (498bp) protein (166aa)
Hypothetical membrane protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3X6_GEMAT
hypothetical membrane protein; K03571 rod shape-determining protein MreD Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
rod shape-determining protein MreD
13_1_40cm_2_scaffold_89_17
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(17653..18522)
DNA (870bp) protein (290aa)
Rod shape-determining protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3X7_GEMAT
rod shape-determining protein; K03570 rod shape-determining protein MreC Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
rod shape-determining protein
13_1_40cm_2_scaffold_89_18
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(18527..19570)
DNA (1044bp) protein (348aa)
Rod shape-determining protein MreB n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3X8_GEMAT
mreB; rod shape-determining protein MreB; K03569 rod shape-determining protein MreB and related proteins Tax=RBG_16_Gemmatimonadetes_66_8_curated
mreB; rod shape-determining protein MreB
13_1_40cm_2_scaffold_89_19
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

19684..19902
DNA (219bp) protein (73aa)
DUF362 iron-sulfur cluster-binding domain protein id=4695619 bin=GWC2_Pelobacter_58_13 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
13_1_40cm_2_scaffold_89_20
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

19895..21070
DNA (1176bp) protein (392aa)
Digeranylgeranylglycerophospholipid reductase n=1 Tax=Ferroglobus placidus (strain DSM 10642 / AEDII12DO) RepID=D3S2L4_FERPA
Dehydrogenase flavoprotein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
geranylgeranyl reductase
13_1_40cm_2_scaffold_89_21
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

21079..21987
DNA (909bp) protein (303aa)
fabI; enoyl-(acyl carrier protein) reductase (EC:1.3.1.9); K00208 enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9] Tax=GWC2_Gemmatimonadetes_71_10_curated
fabI; enoyl-(acyl carrier protein) reductase (EC:1.3.1.9)
Enoyl-[acyl-carrier-protein] reductase [NADH] n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ADQ6_GEMAT
13_1_40cm_2_scaffold_89_22
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(22009..22725)
DNA (717bp) protein (239aa)
Polysaccharide deacetylase n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0LH57_9BACT
polysaccharide deacetylase Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
polysaccharide deacetylase
13_1_40cm_2_scaffold_89_23
unknown

Not on your lists

comp(22793..22912)
DNA (120bp) protein (40aa)

This feature has no annotations

13_1_40cm_2_scaffold_89_24
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23048..23497)
DNA (450bp) protein (150aa)
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071038}; Short=dUTPase {ECO:0000256|HAMAP-Rule:MF_00116};; EC=3.6.1.23 {ECO:0000256|HAMAP-Rule
Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQ77_9SPHN
dut; deoxyuridine 5'-triphosphate nucleotidohydrolase
13_1_40cm_2_scaffold_89_25
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(23494..24606)
DNA (1113bp) protein (371aa)
alanine dehydrogenase; K00259 alanine dehydrogenase [EC:1.4.1.1] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Alanine dehydrogenase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3X9_GEMAT
alanine dehydrogenase
13_1_40cm_2_scaffold_89_26
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(24658..25935)
DNA (1278bp) protein (426aa)
Putative S16B family peptidase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3Y0_GEMAT
putative S16B family peptidase Tax=RBG_16_Gemmatimonadetes_66_8_curated
peptidase M16 domain protein
13_1_40cm_2_scaffold_89_27
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(25935..28034)
DNA (2100bp) protein (700aa)
pnp; polyribonucleotide nucleotidyltransferase (EC:2.7.7.8); K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Polyribonucleotide nucleotidyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=PNP_GEMAT
Polyribonucleotide nucleotidyltransferase
13_1_40cm_2_scaffold_89_28
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists


comp(28120..28377)
DNA (258bp) protein (86aa)
30S ribosomal protein S15 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3Y2_GEMAT
rpsO; 30S ribosomal protein S15; K02956 small subunit ribosomal protein S15 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
rpsO; 30S ribosomal protein S15
13_1_40cm_2_scaffold_89_29
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

28443..29432
DNA (990bp) protein (330aa)
putative serine/threonine protein kinase (EC:2.7.11.1) Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
putative serine/threonine protein kinase (EC:2.7.11.1)
Putative serine/threonine protein kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3Y3_GEMAT
13_1_40cm_2_scaffold_89_30
unknown

Not on your lists

comp(29429..29782)
DNA (354bp) protein (118aa)

This feature has no annotations

Displaying items 1-30 of 53 in total

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