ggKbase home page

13_1_40cm_2_scaffold_12

Search features with annotation key words

Displaying items 1-30 of 60 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_12_1
unknown

Not on your lists

comp(3..176)
DNA (174bp) protein (58aa)

This feature has no annotations

13_1_40cm_2_scaffold_12_2
RLO_PLX_64_10, Bacteria

Not on your lists

comp(173..1345)
DNA (1173bp) protein (391aa)
atoB; Acetyl-CoA C-acetyltransferase; K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
Acetyl-CoA acetyltransferase id=1747646 bin=GWB2_Ignavibacteria_35_12 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB2_Ignavibacteria_35_12 organism_group=Ignavibacteria organism_desc=Good
acetyl-CoA acetyltransferase
13_1_40cm_2_scaffold_12_3
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1342..1740)
DNA (399bp) protein (133aa)
MerR family transcriptional regulator Tax=RBG_13_Deltaproteobacteria_53_10_curated
Transcriptional regulator, MerR family id=4430748 bin=GWA2_Deltaproteo_65_63 species=Deferribacter desulfuricans genus=Deferribacter taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria
MerR family transcriptional regulator
13_1_40cm_2_scaffold_12_4
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(1786..2154)
DNA (369bp) protein (123aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
Putative uncharacterized protein id=4341235 bin=GWF2_Methylomirabilis_70_14 species=Conexibacter woesei genus=Conexibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_2_scaffold_12_5
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(2178..2432)
DNA (255bp) protein (85aa)
id=4341237 Tax=RBG_16_Actinobacteria_67_10_curated
id=4341237 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_12_6
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(2478..2876)
DNA (399bp) protein (133aa)
hypothetical protein n=1 Tax=Pleurocapsa sp. PCC 7319 RepID=UPI000345431B
histidine triad (HIT) protein; K02503 Hit-like protein involved in cell-cycle regulation Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
histidine triad (HIT) protein
13_1_40cm_2_scaffold_12_7
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2909..4051)
DNA (1143bp) protein (381aa)
citrate synthase (EC:2.3.3.1)
Citrate synthase n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AT04_RUBXD
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter
13_1_40cm_2_scaffold_12_8
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(4239..5306)
DNA (1068bp) protein (356aa)
allantoate amidohydrolase; K06016 N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.87] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
N-carbamoyl-L-amino acid hydrolase n=1 Tax=Caenispirillum salinarum AK4 RepID=K9GTB8_9PROT
allantoate amidohydrolase
13_1_40cm_2_scaffold_12_9
unknown

Not on your lists

comp(5453..5983)
DNA (531bp) protein (177aa)

This feature has no annotations

13_1_40cm_2_scaffold_12_10
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

6045..6617
DNA (573bp) protein (191aa)
RNA polymerase sigma factor FliA n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82S67_NITEU
RNA polymerase sigma-28 subunit FliA/WhiG; K02405 RNA polymerase sigma factor for flagellar operon FliA Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
fliA; RNA polymerase sigma-70 factor family protein
13_1_40cm_2_scaffold_12_11
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

6663..6989
DNA (327bp) protein (109aa)
hypothetical protein n=1 Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI00036131AE
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
13_1_40cm_2_scaffold_12_12
unknown

Not on your lists

comp(6972..7406)
DNA (435bp) protein (145aa)

This feature has no annotations

13_1_40cm_2_scaffold_12_13
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(7454..8056)
DNA (603bp) protein (201aa)
rpe; d-ribulose-5-phosphate 3-epimerase (EC:5.1.3.1); K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
rpe; pentose-5-phosphate-3-epimerase; K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1] id=1241712 bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
ribulose-phosphate 3-epimerase
13_1_40cm_2_scaffold_12_14
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

8184..9413
DNA (1230bp) protein (410aa)
Aminotransferase class V n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CBU3_THET1
class V aminotransferase Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
class V aminotransferase
13_1_40cm_2_scaffold_12_15
Thermobaculum terrenum, Thermobaculum, Bacteria

Not on your lists

9505..11010
DNA (1506bp) protein (502aa)
D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95)
D-3-phosphoglycerate dehydrogenase {ECO:0000313|EMBL:ACZ42342.1}; EC=1.1.1.95 {ECO:0000313|EMBL:ACZ42342.1};; TaxID=525904 species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain AT
D-3-phosphoglycerate dehydrogenase n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CC27_THET1
13_1_40cm_2_scaffold_12_16
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(11007..11783)
DNA (777bp) protein (259aa)
type 11 methyltransferase Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
type 11 methyltransferase id=24524924 bin=RBG_19FT_COMBO_GAL15_69_19 species=Actinopolymorpha alba genus=Actinopolymorpha taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
type 11 methyltransferase
13_1_40cm_2_scaffold_12_17
Terrabacter sp. 28, Terrabacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11794..12318)
DNA (525bp) protein (175aa)
chorismate synthase n=1 Tax=Serinicoccus marinus RepID=UPI0003B45D31
Chorismate synthase {ECO:0000313|EMBL:KJK12996.1}; TaxID=1619947 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Terrabacter.;" source="Terrabacter sp. 28.;"
13_1_40cm_2_scaffold_12_18
Nocardioides luteus, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12315..13163)
DNA (849bp) protein (283aa)
hypothetical protein n=1 Tax=Actinopolymorpha alba RepID=UPI0003811C87
F420-dependent oxidoreductase {ECO:0000313|EMBL:KJR11725.1}; TaxID=1844 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides luteus.;"
luciferase-like monooxygenase
13_1_40cm_2_scaffold_12_19
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

13217..13546
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EYS0_9BACT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
hypothetical protein
13_1_40cm_2_scaffold_12_20
BJP_IG2157_Anaerolineales_55_23, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

13518..14075
DNA (558bp) protein (186aa)
pyridoxamine 5''''-phosphate oxidase n=1 Tax=Serinicoccus profundi RepID=UPI000255E628
pyridoxamine 5'-phosphate oxidase-related FMN-binding protein
Tax=BJP_IG2157_Anaerolineales_55_23
13_1_40cm_2_scaffold_12_21
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

14077..14529
DNA (453bp) protein (151aa)
glyoxalase n=1 Tax=Frankia sp. BMG5.12 RepID=UPI0003804B4C
glyoxalase/bleomycin resistance protein/dioxygenase Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
glyoxalase/bleomycin resistance protein/dioxygenase
13_1_40cm_2_scaffold_12_22
Streptomyces tsukubaensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14526..14858)
DNA (333bp) protein (111aa)
YbaK/prolyl-tRNA synthetase associated protein n=1 Tax=Streptomyces tsukubaensis NRRL18488 RepID=I2MZR8_9ACTO
YbaK/prolyl-tRNA synthetase associated protein {ECO:0000313|EMBL:EIF90265.1}; TaxID=1114943 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces
SCE87.16c; hypothetical protein
13_1_40cm_2_scaffold_12_23
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(15002..17326)
DNA (2325bp) protein (775aa)
Transglutaminase domain protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TKK4_9CHLR
transglutaminase domain-containing protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
transglutaminase domain-containing protein
13_1_40cm_2_scaffold_12_24
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(17323..18531)
DNA (1209bp) protein (403aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
hypothetical protein id=14628693 bin=bin8_Chloro species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin8_Chloro organism_group=Chloroflexi
hypothetical protein
13_1_40cm_2_scaffold_12_25
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(18535..19494)
DNA (960bp) protein (320aa)
ATPase; K03924 MoxR-like ATPase [EC:3.6.3.-] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
ATPase associated with various cellular activities AAA_3 id=4802545 bin=GWC2_Chloroflexi_73_18 species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
ATPase
13_1_40cm_2_scaffold_12_26
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(19805..21244)
DNA (1440bp) protein (480aa)
peptidoglycan glycosyltransferase (EC:2.4.1.129); K05364 peptidoglycan glycosyltransferase [EC:2.4.1.129] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
Peptidoglycan glycosyltransferase n=1 Tax=Desulfotomaculum ruminis (strain ATCC 23193 / DSM 2154 / NCIB 8452 / DL) RepID=F6DM83_DESRL
peptidoglycan glycosyltransferase
13_1_40cm_2_scaffold_12_27
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(21244..22638)
DNA (1395bp) protein (465aa)
Putative FtsW/RodA/SpoVE family cell cycle protein n=1 Tax=Ilumatobacter coccineus YM16-304 RepID=M4ZV00_9ACTN rbh
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
putative FtsW/RodA/SpoVE family cell cycle protein
13_1_40cm_2_scaffold_12_28
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(22635..23075)
DNA (441bp) protein (147aa)
forkhead-associated protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
FHA domain-containing protein id=14628689 bin=bin8_Chloro species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin8_Chloro organism_group=Chloroflexi
FHA domain-containing protein
13_1_40cm_2_scaffold_12_29
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(23076..23831)
DNA (756bp) protein (252aa)
Forkhead-associated protein n=1 Tax=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) RepID=A9WEE2_CHLAA
forkhead-associated protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
forkhead-associated protein
13_1_40cm_2_scaffold_12_30
Chthonomonas calidirosea, Chthonomonas, Chthonomonadales, Chthonomonadetes, Armatimonadetes, Bacteria

Not on your lists

comp(23818..24480)
DNA (663bp) protein (221aa)
tRNA-processing RNAse BN n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EY18_9BACT
tRNA-processing RNAse BN
tRNA-processing RNAse BN {ECO:0000313|EMBL:CCW36414.1}; TaxID=1303518 species="Bacteria; Armatimonadetes; Chthonomonadetes; Chthonomonadales; Chthonomonadaceae; Chthonomonas.;" source="Chthonomonas ca
Displaying items 1-30 of 60 in total

View Taxonomy