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13_1_40cm_2_scaffold_1873

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Displaying 24 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_1873_1
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(3..713)
DNA (711bp) protein (237aa)
cycK; cytochrome c-type biogenesis protein cycK Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
cycK; cytochrome c-type biogenesis protein cycK id=14632704 bin=bin9_gal15 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin9_gal15 organism_group=GAL15
cytochrome c assembly protein
13_1_40cm_2_scaffold_1873_2
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(713..1147)
DNA (435bp) protein (145aa)
cytochrome c-type biogenesis protein CcmE Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
Cytochrome c-type biogenesis protein ccmE (Cytochrome c maturation protein E) (Heme chaperone ccmE) id=4062404 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ccmE; cytochrome c-type biogenesis protein CcmE
13_1_40cm_2_scaffold_1873_3
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(1217..1942)
DNA (726bp) protein (242aa)
Cytochrome c assembly protein n=1 Tax=Streptomyces zinciresistens K42 RepID=G2GM59_9ACTO
cytochrome c assembly protein; K02195 heme exporter protein C Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
cytochrome c assembly protein
13_1_40cm_2_scaffold_1873_4
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(1939..2607)
DNA (669bp) protein (223aa)
heme exporter protein B n=1 Tax=Meiothermus timidus RepID=UPI00036BC7C6
Cytochrome c-type biogenesis protein, heme exporter protein B; K02194 heme exporter protein B Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
cytochrome c-type biogenesis protein CcmB
13_1_40cm_2_scaffold_1873_5
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(2604..3275)
DNA (672bp) protein (224aa)
heme exporter protein A (EC:3.6.3.41) Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
UPI0003D3DC58 related cluster n=1 Tax=unknown RepID=UPI0003D3DC58
heme exporter protein CcmA
13_1_40cm_2_scaffold_1873_6
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

3298..3624
DNA (327bp) protein (109aa)
Putative uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
Putative uncharacterized protein id=3202763 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
putative cytochrome c oxidase subunit II
13_1_40cm_2_scaffold_1873_7
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

3640..4221
DNA (582bp) protein (194aa)
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
RNA polymerase sigma-70 factor, ECF subfamily id=2777671 bin=GWC2_Chloroflexi_73_18 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
putative RNA polymerase ECF-subfamily sigma factor
13_1_40cm_2_scaffold_1873_8
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

4218..4979
DNA (762bp) protein (254aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
13_1_40cm_2_scaffold_1873_9
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

5086..5463
DNA (378bp) protein (126aa)
Response regulator receiver sensor signal transduction histidine kinase n=1 Tax=Oscillatoria nigro-viridis PCC 7112 RepID=K9VP76_9CYAN
putative phosphate regulon transcriptional regulatory protein PhoB; K07658 two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP Tax=RIFCSPLOWO2_12_FULL_Acidobacter
response regulator receiver modulated diguanylate cyclase
13_1_40cm_2_scaffold_1873_10
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5538..6119
DNA (582bp) protein (194aa)
Ribonuclease VapC n=1 Tax=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) RepID=C5BY84_BEUC1
twitching mobility protein PilT; K07062 Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
twitching mobility protein PilT
13_1_40cm_2_scaffold_1873_11
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(6144..8000)
DNA (1857bp) protein (619aa)
1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7); K01662 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SKS2_THEM7
13_1_40cm_2_scaffold_1873_12
Burkholderia sp. RPE64, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8016..8789
DNA (774bp) protein (258aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Burkholderia sp. RPE64 RepID=R4X447_9BURK
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:BAN26982.1}; TaxID=758793 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Bu
13_1_40cm_2_scaffold_1873_13
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

Not on your lists

8817..9266
DNA (450bp) protein (150aa)
hypothetical protein id=14632091 bin=bin9_gal15 species=Chloroflexus aggregans genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin9_gal15 organism_group=GAL15
hypothetical protein Tax=CSP1_3_Armatimonadetes
hypothetical protein
13_1_40cm_2_scaffold_1873_14
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9263..9775)
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9F9E9_SORC5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAN94746.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium ce
13_1_40cm_2_scaffold_1873_15
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

9899..11224
DNA (1326bp) protein (442aa)
trxB; thioredoxin reductase (EC:1.8.1.9); K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
thioredoxin reductase n=1 Tax=Bacillus acidiproducens RepID=UPI00036BFAEA
thioredoxin reductase
13_1_40cm_2_scaffold_1873_16
GWA2_Elusimicrobia_61_42_curated, Elusimicrobia, Bacteria

Not on your lists

comp(11221..11634)
DNA (414bp) protein (138aa)
Two component transcriptional regulator PhoB, winged helix family n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KWW0_HALNC
two component transcriptional regulator, winged helix family; K07657 two-component system, OmpR family, phosphate regulon response regulator PhoB Tax=GWA2_Elusimicrobia_61_42_curated
PhoB family transcriptional regulator
13_1_40cm_2_scaffold_1873_17
BJP_IG2103_TM7_39_1400, Candidatus Saccharibacteria, Bacteria

Not on your lists

comp(11663..12262)
DNA (600bp) protein (200aa)
Uncharacterized protein n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EHQ2_9CHLR
hypothetical protein
Tax=BJP_IG2103_TM7_39_1400
13_1_40cm_2_scaffold_1873_18
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(12259..13947)
DNA (1689bp) protein (563aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
13_1_40cm_2_scaffold_1873_19
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

14236..15663
DNA (1428bp) protein (476aa)
TldD/PmbA family protein n=1 Tax=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) RepID=B5YBV4_DICT6
TldD/PmbA family protein; K03568 TldD protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
TldD/PmbA family protein
13_1_40cm_2_scaffold_1873_20
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

Not on your lists

15660..17042
DNA (1383bp) protein (461aa)
peptidase U62 family protein Tax=RBG_16_Chloroflexi_68_14_curated
peptidase U62 modulator of DNA gyrase id=7200897 bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
TldD protein
13_1_40cm_2_scaffold_1873_21
unknown

Not on your lists

17185..17301
DNA (117bp) protein (39aa)

This feature has no annotations

13_1_40cm_2_scaffold_1873_22
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

17445..18155
DNA (711bp) protein (237aa)
phoB; response regulator in two-component regulatory system with PhoR (or CreC), regulation of Pi uptake (OmpR family) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
phoB; response regulator in two-component regulatory system with PhoR (or CreC), regulation of Pi uptake (OmpR family) id=14625802 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_2_scaffold_1873_23
GWD2_Clostridiales_32_59_curated, Clostridiales, Bacteria

Not on your lists

18260..18832
DNA (573bp) protein (191aa)
TadE family protein Tax=GWD2_Clostridiales_32_59_curated
13_1_40cm_2_scaffold_1873_24
unknown

Not on your lists

18850..19035
DNA (186bp) protein (62aa)

This feature has no annotations

Displaying 24 items

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