ggKbase home page

13_1_40cm_2_scaffold_5034

Search features with annotation key words

Displaying 15 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_5034_1

Not on your lists

comp(3..1448)
DNA (1446bp) protein (482aa)
hypothetical protein n=1 Tax=Marine Group I thaumarchaeote SCGC AB-629-I23 RepID=UPI00037E4EBF
Uncharacterized protein {ECO:0000313|EMBL:KKM89958.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
glutamyl-tRNA synthetase
13_1_40cm_2_scaffold_5034_2
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(1449..2453)
DNA (1005bp) protein (335aa)
gds; Geranylgeranyl diphosphate synthase (EC:2.5.1.29)
polyprenyl synthetase id=14427191 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon rbh
polyprenyl synthetase Tax=CSP1_1_Thaumarchaeota
13_1_40cm_2_scaffold_5034_3
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(2432..3070)
DNA (639bp) protein (213aa)
isopentenyl-diphosphate delta-isomerase id=14427190 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
isopentenyl-diphosphate delta-isomerase Tax=CSP1_1_Thaumarchaeota
isopentenyl-diphosphate delta-isomerase
13_1_40cm_2_scaffold_5034_4

Not on your lists

comp(3080..3820)
DNA (741bp) protein (247aa)
Uridylate kinase protein {ECO:0000313|EMBL:KFM21426.1}; EC=2.7.2.11 {ECO:0000313|EMBL:KFM21426.1};; TaxID=1502289 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota; Marine Group I.;" sourc
Aspartate/glutamate/uridylate kinase n=1 Tax=Nitrosopumilus maritimus (strain SCM1) RepID=A9A426_NITMS rbh
aspartate/glutamate/uridylate kinase
13_1_40cm_2_scaffold_5034_5
Candidatus Nitrosoarchaeum limnia, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(3956..4909)
DNA (954bp) protein (318aa)
Mevalonate kinase {ECO:0000256|HAMAP-Rule:MF_00217}; Short=MK {ECO:0000256|HAMAP-Rule:MF_00217};; Short=MVK {ECO:0000256|HAMAP-Rule:MF_00217};; EC=2.7.1.36 {ECO:0000256|HAMAP-Rule:MF_00217};; TaxID=88
Mevalonate kinase n=1 Tax=Candidatus Nitrosoarchaeum limnia SFB1 RepID=F3KL19_9ARCH rbh
mevalonate kinase
13_1_40cm_2_scaffold_5034_6

Not on your lists

comp(4906..5742)
DNA (837bp) protein (279aa)
Uncharacterized protein {ECO:0000313|EMBL:KKL68126.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein id=14427187 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon rbh
MEMO1 family protein
13_1_40cm_2_scaffold_5034_7
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists


comp(5747..6418)
DNA (672bp) protein (224aa)
rps2P; 30S ribosomal protein S2; K02967 small subunit ribosomal protein S2 id=14427186 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon rbh
rps2P; 30S ribosomal protein S2; K02967 small subunit ribosomal protein S2 Tax=CSP1_1_Thaumarchaeota
rps2P; 30S ribosomal protein S2
13_1_40cm_2_scaffold_5034_8
Candidatus Nitrosoarchaeum limnia, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(6428..7666)
DNA (1239bp) protein (413aa)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000
Enolase n=2 Tax=Candidatus Nitrosoarchaeum limnia RepID=F3KL16_9ARCH rbh
phosphopyruvate hydratase
13_1_40cm_2_scaffold_5034_trna_1
unknown

Not on your lists

7957..8041
DNA (85bp)
transferRNA
13_1_40cm_2_scaffold_5034_9
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

8411..9061
DNA (651bp) protein (217aa)
carbohydrate kinase id=14427182 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
carbohydrate kinase Tax=CSP1_1_Thaumarchaeota
YjeF family N-terminal domain protein
13_1_40cm_2_scaffold_5034_10
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

9058..9672
DNA (615bp) protein (205aa)
Beta-lactamase domain protein n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6ARJ1_9ARCH rbh
Beta-lactamase domain protein {ECO:0000313|EMBL:CDI05179.1}; TaxID=1407055 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
Beta-lactamase domain-containing protein
13_1_40cm_2_scaffold_5034_11

Not on your lists

9691..10731
DNA (1041bp) protein (347aa)
NaMN:DMB phosphoribosyltransferase {ECO:0000313|EMBL:AIF01239.1}; TaxID=1456010 species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_144_G01.;"
hypothetical protein id=14427180 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon rbh
hypothetical protein
13_1_40cm_2_scaffold_5034_12
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

comp(10724..12484)
DNA (1761bp) protein (587aa)
Glucosamine--fructose-6-phosphate aminotransferase (Isomerizing) {ECO:0000313|EMBL:CDI05181.1}; EC=2.6.1.16 {ECO:0000313|EMBL:CDI05181.1};; TaxID=1407055 species="Archaea; Thaumarchaeota; unclassified
Glucosamine--fructose-6-phosphate aminotransferase (Isomerizing) n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6AR40_9ARCH rbh
glucosamine--fructose-6-phosphate aminotransferase
13_1_40cm_2_scaffold_5034_13
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists


comp(12525..13064)
DNA (540bp) protein (180aa)
rps4p; 30S ribosomal protein S4 id=14427178 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
rps4p; 30S ribosomal protein S4 Tax=CSP1_1_Thaumarchaeota
rps4p; 30S ribosomal protein S4
13_1_40cm_2_scaffold_5034_14

Not on your lists


comp(13078..13710)
DNA (633bp) protein (211aa)
30S ribosomal protein S13P n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6ARZ8_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:KKL76339.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
rps; 30S ribosomal protein S13
Displaying 15 items

View Taxonomy