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13_1_40cm_2_scaffold_481

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Displaying items 1-30 of 31 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_481_1
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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1..843
DNA (843bp) protein (281aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01027}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01027};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; Isopropylmalate is
leuC; 3-isopropylmalate dehydratase large subunit 1 (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit 1 n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6ARU7_9ARCH
13_1_40cm_2_scaffold_481_2

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840..1322
DNA (483bp) protein (161aa)
Uncharacterized protein {ECO:0000313|EMBL:KKL99009.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
3-isopropylmalate dehydratase small subunit id=14427088 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
3-isopropylmalate dehydratase small subunit
13_1_40cm_2_scaffold_481_3
Candidatus Nitrosoarchaeum limnia, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

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1371..2783
DNA (1413bp) protein (471aa)
3-isopropylmalate dehydratase, large subunit {ECO:0000313|EMBL:EPA05435.1}; EC=4.2.1.33 {ECO:0000313|EMBL:EPA05435.1};; TaxID=859192 species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilace
leuC; 3-isopropylmalate isomerase subunit, dehydratase component (EC:4.2.1.33)
3-isopropylmalate dehydratase, large subunit n=1 Tax=Candidatus Nitrosoarchaeum limnia BG20 RepID=S2E272_9ARCH rbh
13_1_40cm_2_scaffold_481_4

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2785..3375
DNA (591bp) protein (197aa)
3-isopropylmalate dehydratase small subunit protein {ECO:0000313|EMBL:KFM17051.1}; EC=4.2.1.33 {ECO:0000313|EMBL:KFM17051.1};; TaxID=1502291 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeo
leuD; 3-isopropylmalate isomerase subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase, small subunit n=1 Tax=Candidatus Nitrosoarchaeum limnia SFB1 RepID=F3KMB3_9ARCH
13_1_40cm_2_scaffold_481_5
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(3356..4090)
DNA (735bp) protein (245aa)
nucleotidyl transferase; K00966 mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] id=14427085 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon rbh
nucleotidyl transferase; K00966 mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] Tax=CSP1_1_Thaumarchaeota
nucleotidyl transferase
13_1_40cm_2_scaffold_481_6
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(4093..4548)
DNA (456bp) protein (152aa)
30S ribosomal protein S9 id=14427084 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
30S ribosomal protein S9 Tax=CSP1_1_Thaumarchaeota
30S ribosomal protein S9
13_1_40cm_2_scaffold_481_7
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(4536..5018)
DNA (483bp) protein (161aa)
ribosomal protein L13; K02871 large subunit ribosomal protein L13 id=14427083 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
ribosomal protein L13; K02871 large subunit ribosomal protein L13 Tax=CSP1_1_Thaumarchaeota
rpl13p; 50S ribosomal protein L13p
13_1_40cm_2_scaffold_481_8

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comp(5011..5358)
DNA (348bp) protein (116aa)
Putative ribosomal protein L15 n=1 Tax=uncultured marine crenarchaeote HF4000_APKG8O8 RepID=B3TBC1_9ARCH
Ribosomal protein L15 (RP-L18e, RPL18) {ECO:0000313|EMBL:AIF11604.1}; TaxID=1456179 species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_52_H07.;"
rpl18e; 50S ribosomal protein L18e
13_1_40cm_2_scaffold_481_9
Candidatus Nitrosopumilus sp. D3C, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(5399..6034)
DNA (636bp) protein (212aa)
RNA polymerase insert n=1 Tax=Candidatus Nitrosopumilus koreensis AR1 RepID=K0B2R0_9ARCH
RNA polymerase insert
RNA polymerase insert {ECO:0000313|EMBL:AJM93144.1}; TaxID=1582439 species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus sp. D3C.;"
13_1_40cm_2_scaffold_481_10
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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6121..6807
DNA (687bp) protein (229aa)
RNA-associated protein id=14427080 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
RNA-associated protein Tax=CSP1_1_Thaumarchaeota
Shwachman-Bodian-Diamond syndrome protein
13_1_40cm_2_scaffold_481_11
Candidatus Nitrosopumilus sp. AR2, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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6807..7508
DNA (702bp) protein (234aa)
Exosome complex component Rrp4 n=1 Tax=Candidatus Nitrosopumilus sp. AR2 RepID=K0B7Z6_9ARCH rbh
exosome complex RNA-binding protein Rrp4
Exosome complex component Rrp4 {ECO:0000256|HAMAP-Rule:MF_00623}; TaxID=1229909 species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumil
13_1_40cm_2_scaffold_481_12
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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7599..8135
DNA (537bp) protein (179aa)
Exosome complex component Rrp41 {ECO:0000256|HAMAP-Rule:MF_00591}; EC=3.1.13.- {ECO:0000256|HAMAP-Rule:MF_00591};; TaxID=1407055 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source
rrp; Exosome complex component Rrp41 (EC:3.1.13.-)
Putative exosome complex exonuclease 1 n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6ARB3_9ARCH
13_1_40cm_2_scaffold_481_13
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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8138..8941
DNA (804bp) protein (268aa)
exosome complex RNA-binding protein Rrp42; K12589 exosome complex component RRP42 id=14427077 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
exosome complex RNA-binding protein Rrp42; K12589 exosome complex component RRP42 Tax=CSP1_1_Thaumarchaeota
3' exoribonuclease family, domain 1
13_1_40cm_2_scaffold_481_14
Nitrosococcus oceani, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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9091..9390
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrosoarchaeum limnia SFB1 RepID=F3KM95_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:KFI17903.1}; TaxID=314279 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus oceani C
hypothetical protein
13_1_40cm_2_scaffold_481_15
Candidatus Nitrosoarchaeum limnia, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

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9414..9806
DNA (393bp) protein (131aa)
Prefoldin subunit beta n=1 Tax=Candidatus Nitrosoarchaeum limnia SFB1 RepID=F3KM94_9ARCH
Prefoldin subunit beta {ECO:0000256|HAMAP-Rule:MF_00307}; GimC subunit beta {ECO:0000256|HAMAP-Rule:MF_00307}; TaxID=886738 species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candi
pfdB; prefoldin, subunit beta
13_1_40cm_2_scaffold_481_16
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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9833..10519
DNA (687bp) protein (229aa)
ERCC4 domain protein n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6ARB9_9ARCH rbh
ERCC4 domain protein {ECO:0000313|EMBL:CDI05276.1}; TaxID=1407055 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
ERCC4 domain-containing protein
13_1_40cm_2_scaffold_481_17
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(10551..11057)
DNA (507bp) protein (169aa)
nucleotide binding protein id=14427072 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
nucleotide binding protein Tax=CSP1_1_Thaumarchaeota
Nucleotide binding protein
13_1_40cm_2_scaffold_481_18
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(11047..11862)
DNA (816bp) protein (272aa)
ATP-NAD/AcoX kinase; K00858 NAD+ kinase [EC:2.7.1.23] id=14427071 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon rbh
ATP-NAD/AcoX kinase; K00858 NAD+ kinase [EC:2.7.1.23] Tax=CSP1_1_Thaumarchaeota
ATP-NAD/AcoX kinase
13_1_40cm_2_scaffold_481_19
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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11953..12690
DNA (738bp) protein (246aa)
Thiosulfate sulfurtransferase (EC:2.8.1.1)
rhodanese domain-containing protein id=14427070 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
rhodanese domain-containing protein Tax=CSP1_1_Thaumarchaeota
13_1_40cm_2_scaffold_481_20
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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12788..13108
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6ARC2_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:CDI05281.1}; TaxID=1407055 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
hypothetical protein
13_1_40cm_2_scaffold_481_21
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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13148..14101
DNA (954bp) protein (318aa)
4Fe-4S ferredoxin iron-sulfur binding domain protein n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6ARK3_9ARCH
4Fe-4S ferredoxin iron-sulfur binding domain protein {ECO:0000313|EMBL:CDI05282.1}; TaxID=1407055 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
4Fe-4S ferredoxin
13_1_40cm_2_scaffold_481_22
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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14296..16179
DNA (1884bp) protein (628aa)
glycosyltransferase, group 2 family protein (EC:2.4.-.-)
glycosyl transferase id=14427067 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon rbh
glycosyl transferase Tax=CSP1_1_Thaumarchaeota
13_1_40cm_2_scaffold_481_23
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(16182..17417)
DNA (1236bp) protein (412aa)
hypothetical protein id=14427066 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
hypothetical protein Tax=CSP1_1_Thaumarchaeota
hypothetical protein
13_1_40cm_2_scaffold_481_24
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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17910..18470
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6ARK9_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:CDI05287.1}; TaxID=1407055 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
hypothetical protein
13_1_40cm_2_scaffold_481_25
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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18470..19645
DNA (1176bp) protein (392aa)
Uncharacterized protein n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6AS88_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:CDI05288.1}; TaxID=1407055 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
hypothetical protein
13_1_40cm_2_scaffold_481_26
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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19762..20196
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6ARD0_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:CDI05291.1}; TaxID=1407055 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
hypothetical protein
13_1_40cm_2_scaffold_481_27
unknown

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20516..21643
DNA (1128bp) protein (376aa)

This feature has no annotations

13_1_40cm_2_scaffold_481_trna_1
unknown

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comp(21763..21836)
DNA (74bp)
transferRNA
13_1_40cm_2_scaffold_481_28
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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21920..22195
DNA (276bp) protein (92aa)
hypothetical protein id=14427062 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
hypothetical protein Tax=CSP1_1_Thaumarchaeota
hypothetical protein
13_1_40cm_2_scaffold_481_29
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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comp(22187..22720)
DNA (534bp) protein (178aa)
50S ribosomal protein L10e n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6ARU9_9ARCH
50S ribosomal protein L10e {ECO:0000313|EMBL:CDI05294.1}; TaxID=1407055 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
50S ribosomal protein L16
Displaying items 1-30 of 31 in total

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