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13_1_40cm_2_scaffold_1302

Search features with annotation key words

Displaying 24 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_1302_1
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(1..354)
DNA (354bp) protein (118aa)
molecular chaperone GroEL n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00036EC3A4
groEL; chaperonin GroEL; K04077 chaperonin GroEL Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
groEL; molecular chaperone GroEL
13_1_40cm_2_scaffold_1302_2
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(367..690)
DNA (324bp) protein (108aa)
chaperonin Cpn10; K04078 chaperonin GroES Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
chaperonin Cpn10; K04078 chaperonin GroES id=12554188 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Co-chaperonin GroES (HSP10)
13_1_40cm_2_scaffold_1302_3
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(842..1051)
DNA (210bp) protein (70aa)
response regulator receiver protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
response regulator receiver protein id=12554187 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
response regulator receiver protein
13_1_40cm_2_scaffold_1302_4
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(1048..1965)
DNA (918bp) protein (306aa)
phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6); K01923 phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6); K01923 phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] id=12554186 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6)
13_1_40cm_2_scaffold_1302_5
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

2066..3112
DNA (1047bp) protein (349aa)
hypothetical protein; K07027 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
hypothetical protein; K07027 id=12554184 bin=CNBR_ACIDO species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
13_1_40cm_2_scaffold_1302_6
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

3117..3575
DNA (459bp) protein (153aa)
nrdR; transcriptional regulator NrdR; K07738 transcriptional repressor NrdR Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
nrdR; transcriptional regulator NrdR; K07738 transcriptional repressor NrdR id=12554183 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
nrdR; transcriptional regulator NrdR
13_1_40cm_2_scaffold_1302_7
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

3680..4201
DNA (522bp) protein (174aa)
id=12554182 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
id=12554182 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
13_1_40cm_2_scaffold_1302_8
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

4354..6681
DNA (2328bp) protein (776aa)
PAS/PAC sensor signal transduction histidine kinase; K13598 two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] id=12554181 bin=CNBR_ACIDO species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
sensor histidine kinase (EC:2.7.13.3)
ntrY; nitrogen regulation sensor histidine kinase NtrY Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
13_1_40cm_2_scaffold_1302_9
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

6703..8151
DNA (1449bp) protein (483aa)
Fis family transcriptional regulator; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
Fis family transcriptional regulator; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX id=12554180 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Fis family transcriptional regulator
13_1_40cm_2_scaffold_1302_10
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(8254..9153)
DNA (900bp) protein (300aa)
glutamate formiminotransferase; K00603 glutamate formiminotransferase [EC:2.1.2.5] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
glutamate formiminotransferase (EC:4.3.1.4)
Glutamate formiminotransferase n=1 Tax=Thermoanaerobacter italicus (strain DSM 9252 / Ab9) RepID=D3T6Z5_THEIA
13_1_40cm_2_scaffold_1302_11
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

9285..10145
DNA (861bp) protein (287aa)
id=12554178 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
id=12554178 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
13_1_40cm_2_scaffold_1302_12
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

10142..11044
DNA (903bp) protein (301aa)
hypothetical protein id=14625969 bin=bin7_NC10_sister species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
RDD domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
13_1_40cm_2_scaffold_1302_13
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

11049..11513
DNA (465bp) protein (155aa)
phosphatidylglycerophosphatase A; K01095 phosphatidylglycerophosphatase A [EC:3.1.3.27] id=12554176 bin=CNBR_ACIDO species=Desulfonatronospira thiodismutans genus=Desulfonatronospira taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
phosphatidylglycerophosphatase A Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
phosphatidylglycerophosphatase A
13_1_40cm_2_scaffold_1302_14
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

11586..12842
DNA (1257bp) protein (419aa)
competence/damage-inducible protein CinA C-terminal domain-containing protein; K03742 competence/damage-inducible protein CinA Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
competence/damage-inducible protein CinA C-terminal domain-containing protein; K03742 competence/damage-inducible protein CinA id=12554175 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
competence/damage-inducible protein CinA C-terminal domain-containing protein
13_1_40cm_2_scaffold_1302_15
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

12893..13468
DNA (576bp) protein (192aa)
2'-5' RNA ligase; K01975 2'-5' RNA ligase [EC:6.5.1.-] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
2'-5' RNA ligase; K01975 2'-5' RNA ligase [EC:6.5.1.-] id=14430507 bin=bin3_NC10 species=Desulfotomaculum hydrothermale genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin3_NC10 organism_group=NC10
LigT; 2'-5' RNA ligase
13_1_40cm_2_scaffold_1302_16
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

13465..14049
DNA (585bp) protein (195aa)
acyl-phosphate glycerol-3-phosphate acyltransferase; K08591 glycerol-3-phosphate acyltransferase PlsY [EC:2.3.1.15] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Glycerol-3-phosphate acyltransferase n=1 Tax=Oceaniovalibus guishaninsula JLT2003 RepID=K2HAN6_9RHOB
hypothetical protein
13_1_40cm_2_scaffold_1302_17
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

14049..15053
DNA (1005bp) protein (335aa)
gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (EC:1.1.1.94); K00057 glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
gpsA; glycerol-3-phosphate dehydrogenase (NAD+ dependent); K00057 glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] id=12555340 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
13_1_40cm_2_scaffold_1302_18
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

15187..16110
DNA (924bp) protein (308aa)
signal recognition particle-docking protein FtsY; K03110 fused signal recognition particle receptor Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
signal recognition particle-docking protein FtsY; K03110 fused signal recognition particle receptor id=12555339 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
ftsY; signal recognition particle GTPase FtsY
13_1_40cm_2_scaffold_1302_19
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

16244..17308
DNA (1065bp) protein (355aa)
ribD; riboflavin biosynthesis protein RibD; K11752 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] Tax=RIFCSPLOWO2_12_
riboflavin biosynthesis protein RibD id=12555338 bin=CNBR_ACIDO species=Deinococcus peraridilitoris genus=Deinococcus taxon_order=Deinococcales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
pyrimidine reductase and pyrimidine deaminase
13_1_40cm_2_scaffold_1302_20
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

17289..17915
DNA (627bp) protein (209aa)
ribE; Riboflavin synthase subunit alpha; K00793 riboflavin synthase [EC:2.5.1.9] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
riboflavin synthase subunit alpha (EC:2.5.1.9); K00793 riboflavin synthase [EC:2.5.1.9] id=12555337 bin=CNBR_ACIDO species=Halalkalicoccus jeotgali genus=Halalkalicoccus taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ribE; riboflavin synthase subunit alpha
13_1_40cm_2_scaffold_1302_21
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

17899..19146
DNA (1248bp) protein (416aa)
GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase (EC:3.5.4.25 4.1.2.-); K14652 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] Tax=RIFC
GTP cyclohydrolase II; K14652 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] id=12555336 bin=CNBR_ACIDO species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
3,4-dihydroxy-2-butanone 4-phosphate synthase
13_1_40cm_2_scaffold_1302_22
Paenibacillus lactis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

19265..19534
DNA (270bp) protein (90aa)
Thiol-disulfide oxidoreductase DCC n=1 Tax=Paenibacillus lactis 154 RepID=G4HMG8_9BACL
Thiol-disulfide oxidoreductase DCC {ECO:0000313|EMBL:EHB54495.1}; TaxID=743719 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus lactis 154.;
hypothetical protein
13_1_40cm_2_scaffold_1302_23
unknown

Not on your lists

19644..19925
DNA (282bp) protein (94aa)

This feature has no annotations

13_1_40cm_2_scaffold_1302_24
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists


20143..21432
DNA (1290bp) protein (430aa)
signal recognition particle subunit FFH/SRP54 (srp54); K03106 signal recognition particle subunit SRP54 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
signal recognition particle subunit FFH/SRP54 (srp54); K03106 signal recognition particle subunit SRP54 id=12555334 bin=CNBR_ACIDO species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
signal recognition particle subunit FFH/SRP54 (srp54)
Displaying 24 items

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