ggKbase home page

13_1_40cm_2_scaffold_2111

Search features with annotation key words

Displaying 27 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_2111_1
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

2..565
DNA (564bp) protein (188aa)
two component, sigma54 specific, Fis family transcriptional regulator Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Two component, sigma54 specific, transcriptional regulator, Fis family id=3929967 bin=GWF2_Nitrospirae_44_13 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
Fis family transcriptional regulator
13_1_40cm_2_scaffold_2111_2
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(584..1669)
DNA (1086bp) protein (362aa)
aroB; 3-dehydroquinate synthase (EC:4.2.3.4) Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
3-dehydroquinate synthase (EC:4.2.3.4); K01735 3-dehydroquinate synthase [EC:4.2.3.4] id=12555531 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
3-dehydroquinate synthase (EC:4.2.3.4)
13_1_40cm_2_scaffold_2111_3
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

1697..3262
DNA (1566bp) protein (522aa)
nadB; L-aspartate oxidase (EC:1.4.3.16); K00278 L-aspartate oxidase [EC:1.4.3.16] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
L-aspartate oxidase (EC:1.4.3.16); K00278 L-aspartate oxidase [EC:1.4.3.16] id=12555530 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
nadB; L-aspartate oxidase (EC:1.4.3.16)
13_1_40cm_2_scaffold_2111_4
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists


3370..4824
DNA (1455bp) protein (485aa)
proS; Proline--tRNA ligase (EC:6.1.1.15) Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
prolyl-tRNA synthetase; K01881 prolyl-tRNA synthetase [EC:6.1.1.15] id=24408285 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
prolyl-tRNA synthetase (EC:6.1.1.15)
13_1_40cm_2_scaffold_2111_5
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(4955..5893)
DNA (939bp) protein (313aa)
id=12555529 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
id=12555529 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
13_1_40cm_2_scaffold_2111_6
unknown

Not on your lists

comp(5899..6219)
DNA (321bp) protein (107aa)

This feature has no annotations

13_1_40cm_2_scaffold_2111_7
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(6308..7111)
DNA (804bp) protein (268aa)
Sec-independent protein translocase subunit TatC; K03118 sec-independent protein translocase protein TatC Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Sec-independent protein translocase TatC; K03118 sec-independent protein translocase protein TatC id=12555526 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Sec-independent protein translocase subunit TatC
13_1_40cm_2_scaffold_2111_8
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(7124..7405)
DNA (282bp) protein (94aa)
twin-arginine translocation protein subunit TatB; K03117 sec-independent protein translocase protein TatB Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
sec-independent translocation protein mttA/Hcf106; K03116 sec-independent protein translocase protein TatA id=12555527 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
twin-arginine translocation protein, TatA/E family subunit
13_1_40cm_2_scaffold_2111_9
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

7501..9123
DNA (1623bp) protein (541aa)
carboxyl-terminal protease; K03797 carboxyl-terminal processing protease [EC:3.4.21.102] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
carboxyl-terminal protease; K03797 carboxyl-terminal processing protease [EC:3.4.21.102] id=12555525 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
carboxyl-terminal protease
13_1_40cm_2_scaffold_2111_10
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

9405..13286
DNA (3882bp) protein (1294aa)
chromosome segregation protein SMC; K03529 chromosome segregation protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
smc; chromosome segregation protein SMC; K03529 chromosome segregation protein id=12555524 bin=CNBR_ACIDO species=Myxococcus xanthus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
chromosome segregation protein SMC
13_1_40cm_2_scaffold_2111_11
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

13315..14181
DNA (867bp) protein (289aa)
Putative uncharacterized protein n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F9N5_ACIC5
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
hypothetical protein
13_1_40cm_2_scaffold_2111_12
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

14159..15289
DNA (1131bp) protein (377aa)
Ste24 endopeptidase; K06013 STE24 endopeptidase [EC:3.4.24.84] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Ste24 endopeptidase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IU73_KORVE
Ste24 endopeptidase
13_1_40cm_2_scaffold_2111_13
unknown

Not on your lists

comp(15298..15642)
DNA (345bp) protein (115aa)

This feature has no annotations

13_1_40cm_2_scaffold_2111_14
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(15724..17850)
DNA (2127bp) protein (709aa)
polynucleotide phosphorylase/polyadenylase; K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
polynucleotide phosphorylase/polyadenylase; K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] id=12555521 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
polynucleotide phosphorylase
13_1_40cm_2_scaffold_2111_15
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists


comp(17934..18203)
DNA (270bp) protein (90aa)
rpsO; 30S ribosomal protein S15; K02956 small subunit ribosomal protein S15 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
rpsO; 30S ribosomal protein S15; K02956 small subunit ribosomal protein S15 id=12555520 bin=CNBR_ACIDO species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rpsO; 30S ribosomal protein S15
13_1_40cm_2_scaffold_2111_16
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(18292..19278)
DNA (987bp) protein (329aa)
tRNA pseudouridine synthase B (EC:4.2.1.70); K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
truB; tRNA pseudouridine synthase B (EC:4.2.1.70)
tRNA pseudouridine synthase B n=1 Tax=Actinomyces cardiffensis F0333 RepID=N6WFP0_9ACTO
13_1_40cm_2_scaffold_2111_17
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(19290..20312)
DNA (1023bp) protein (341aa)
exopolyphosphatase-like protein; K06881 phosphoesterase RecJ domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
exopolyphosphatase-like protein; K06881 phosphoesterase RecJ domain-containing protein id=12555518 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
exopolyphosphatase-like protein
13_1_40cm_2_scaffold_2111_18
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(20293..20754)
DNA (462bp) protein (154aa)
rbfA; ribosome-binding factor A; K02834 ribosome-binding factor A Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
rbfA; ribosome-binding factor A; K02834 ribosome-binding factor A id=12555517 bin=CNBR_ACIDO species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rbfA; ribosome-binding factor A
13_1_40cm_2_scaffold_2111_19
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(20844..21125)
DNA (282bp) protein (94aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01W30_SOLUE
hypothetical protein; K09764 hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
hypothetical protein
13_1_40cm_2_scaffold_2111_20
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(21217..24051)
DNA (2835bp) protein (945aa)
translation initiation factor 2; K02519 translation initiation factor IF-2 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
translation initiation factor 2; K02519 translation initiation factor IF-2 id=12555516 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
translation initiation factor 2
13_1_40cm_2_scaffold_2111_21
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(24055..25479)
DNA (1425bp) protein (475aa)
nusA; transcription termination factor NusA; K02600 N utilization substance protein A Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
NusA antitermination factor; K02600 N utilization substance protein A id=12555515 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
NusA antitermination factor
13_1_40cm_2_scaffold_2111_22
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(25480..25959)
DNA (480bp) protein (160aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
hypothetical protein; K09748 ribosome maturation factor RimP id=12555514 bin=CNBR_ACIDO species=unknown genus=Thermotoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
13_1_40cm_2_scaffold_2111_23
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(26032..26994)
DNA (963bp) protein (321aa)
30S ribosomal protein S12P methylthiotransferase; K14441 ribosomal protein S12 methylthiotransferase [EC:2.-.-.-] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
30S ribosomal protein S12P methylthiotransferase; K14441 ribosomal protein S12 methylthiotransferase [EC:2.-.-.-] id=12555513 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
30S ribosomal protein S12P methylthiotransferase
13_1_40cm_2_scaffold_2111_24
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(27116..27415)
DNA (300bp) protein (100aa)
RNA modification enzyme, MiaB-family; K14441 ribosomal protein S12 methylthiotransferase [EC:2.-.-.-] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
30S ribosomal protein S12P methylthiotransferase; K14441 ribosomal protein S12 methylthiotransferase [EC:2.-.-.-] id=12555513 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
RNA modification enzyme, MiaB-family
13_1_40cm_2_scaffold_2111_25
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(27525..28820)
DNA (1296bp) protein (432aa)
asparaginyl-tRNA synthetase (EC:6.1.1.22); K01893 asparaginyl-tRNA synthetase [EC:6.1.1.22] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
asparaginyl-tRNA synthetase (EC:6.1.1.22); K01893 asparaginyl-tRNA synthetase [EC:6.1.1.22] id=12555512 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
asnS; asparaginyl-tRNA synthetase (EC:6.1.1.22)
13_1_40cm_2_scaffold_2111_26
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(28802..29527)
DNA (726bp) protein (242aa)
xylose isomerase-like TIM barrel Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
13_1_40cm_2_scaffold_2111_27
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(29633..30466)
DNA (834bp) protein (278aa)
putative phosphotransferase (EC:2.7.1.-); K07102 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
aminoglycoside phosphotransferase id=12555511 bin=CNBR_ACIDO species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
aminoglycoside phosphotransferase
Displaying 27 items

View Taxonomy