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13_1_40cm_2_scaffold_804

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Displaying 27 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_804_1
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists


1..117
DNA (117bp) protein (39aa)
50S ribosomal protein L13 n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KJ59_9FIRM
50S ribosomal protein L13; K02871 large subunit ribosomal protein L13 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
LSU ribosomal protein L13P
13_1_40cm_2_scaffold_804_2
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists


119..511
DNA (393bp) protein (131aa)
30S ribosomal protein S9; K02996 small subunit ribosomal protein S9 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
30S ribosomal protein S9; K02996 small subunit ribosomal protein S9 id=12555303 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
30S ribosomal protein S9
13_1_40cm_2_scaffold_804_3
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists


520..735
DNA (216bp) protein (72aa)
30S ribosomal protein S2 n=1 Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8V5Y8_TERSS
rpsB; 30S ribosomal protein S2; K02967 small subunit ribosomal protein S2 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
30S ribosomal protein S2
13_1_40cm_2_scaffold_804_4
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists


732..1262
DNA (531bp) protein (177aa)
rpsB; 30S ribosomal protein S2; K02967 small subunit ribosomal protein S2 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
rpsB; 30S ribosomal protein S2; K02967 small subunit ribosomal protein S2 id=12555304 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
30S ribosomal protein S2
13_1_40cm_2_scaffold_804_5
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

1345..2298
DNA (954bp) protein (318aa)
tsf; elongation factor Ts; K02357 elongation factor Ts Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
Elongation factor Ts id=4128906 bin=GWC2_Proteo_65_14_Ab886 species=Clostridium colicanis genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
elongation factor Ts
13_1_40cm_2_scaffold_804_6
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

2298..2960
DNA (663bp) protein (221aa)
uridylate kinase; K09903 uridylate kinase [EC:2.7.4.22] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
pyrH; uridylate kinase; K09903 uridylate kinase [EC:2.7.4.22] id=12555306 bin=CNBR_ACIDO species=Geobacter bemidjiensis genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
uridylate kinase
13_1_40cm_2_scaffold_804_7
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

2979..3548
DNA (570bp) protein (190aa)
ribosome recycling factor; K02838 ribosome recycling factor Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
ribosome recycling factor; K02838 ribosome recycling factor id=12555307 bin=CNBR_ACIDO species=Holophaga foetida genus=Holophaga taxon_order=Holophagales taxon_class=Holophagae phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ribosome recycling factor
13_1_40cm_2_scaffold_804_8
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

3817..4809
DNA (993bp) protein (331aa)
threonine synthase (EC:4.2.3.1); K01733 threonine synthase [EC:4.2.3.1] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
putative threonine synthase; K01733 threonine synthase [EC:4.2.3.1] id=24499170 bin=RBG_19FT_COMBO_Aminicenantes_65_30 species=Caldilinea aerophila genus=Caldilinea taxon_order=Caldilineales taxon_class=Caldilineae phylum=Chloroflexi tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
threonine synthase (EC:4.2.3.1)
13_1_40cm_2_scaffold_804_9
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

4806..5063
DNA (258bp) protein (86aa)
hypothetical protein id=12554644 bin=CNBR_ACIDO species=Sphingobium sp. YL23 genus=Sphingobium taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
transglycosylase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
hypothetical protein
13_1_40cm_2_scaffold_804_10
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(5060..6142)
DNA (1083bp) protein (361aa)
6-phosphofructokinase; K00850 6-phosphofructokinase [EC:2.7.1.11] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
phosphofructokinase (EC:2.7.1.11); K00850 6-phosphofructokinase [EC:2.7.1.11] id=12555308 bin=CNBR_ACIDO species=Herbaspirillum sp. JC206 genus=Herbaspirillum taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
phosphofructokinase (EC:2.7.1.11)
13_1_40cm_2_scaffold_804_trna_1
unknown

Not on your lists

6195..6267
DNA (73bp)
transferRNA
13_1_40cm_2_scaffold_804_11
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

6906..7304
DNA (399bp) protein (133aa)
Sec-independent protein translocase subunit TatC; K03118 sec-independent protein translocase protein TatC Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
Sec-independent protein translocase TatC; K03118 sec-independent protein translocase protein TatC id=12555526 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Sec-independent protein translocase subunit TatC
13_1_40cm_2_scaffold_804_12
unknown

Not on your lists

comp(7298..7498)
DNA (201bp) protein (67aa)

This feature has no annotations

13_1_40cm_2_scaffold_804_13
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

7739..7957
DNA (219bp) protein (73aa)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
13_1_40cm_2_scaffold_804_14
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

8074..8442
DNA (369bp) protein (123aa)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
13_1_40cm_2_scaffold_804_15
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

8494..10191
DNA (1698bp) protein (566aa)
PHP domain protein n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9KYM2_THERP
PHP domain-containing protein; K02347 DNA polymerase (family X) Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PHP domain-containing protein
13_1_40cm_2_scaffold_804_16
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

10220..12097
DNA (1878bp) protein (626aa)
Putative uncharacterized protein n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AXH9_RUBXD
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
hypothetical protein
13_1_40cm_2_scaffold_804_17
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

12283..12918
DNA (636bp) protein (212aa)
outer membrane lipoprotein carrier protein LolA; K03634 outer membrane lipoprotein carrier protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
lolA1; hypothetical protein; K03634 outer membrane lipoprotein carrier protein id=12555310 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
outer membrane lipoprotein carrier protein LolA
13_1_40cm_2_scaffold_804_18
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

12890..14680
DNA (1791bp) protein (597aa)
type II and III secretion system protein; K02453 general secretion pathway protein D Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
type II and III secretion system protein; K02453 general secretion pathway protein D id=12555311 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
type II and III secretion system protein
13_1_40cm_2_scaffold_804_19
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(14913..16169)
DNA (1257bp) protein (419aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; K00790 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; K00790 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] id=12555319 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
13_1_40cm_2_scaffold_804_20
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(16330..17262)
DNA (933bp) protein (311aa)
murB; UDP-N-acetylenolpyruvoylglucosamine reductase; K00075 UDP-N-acetylmuramate dehydrogenase [EC:1.1.1.158] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
UDP-N-acetylenolpyruvoylglucosamine reductase (EC:1.1.1.158); K00075 UDP-N-acetylmuramate dehydrogenase [EC:1.1.1.158] id=12555320 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
UDP-N-acetylenolpyruvoylglucosamine reductase (EC:1.1.1.158)
13_1_40cm_2_scaffold_804_21
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(17259..18200)
DNA (942bp) protein (314aa)
putative allophanate hydrolase subunit 2 (EC:3.5.1.54) Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Urea amidolyase related protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GH22_9FIRM
allophanate hydrolase subunit 2
13_1_40cm_2_scaffold_804_22
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(18306..19001)
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I823_9FIRM
allophanate hydrolase subunit 1 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
conserved hypothetical protein TIGR00370
13_1_40cm_2_scaffold_804_23
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(19090..20526)
DNA (1437bp) protein (479aa)
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (EC:6.3.2.-); K02558 UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.-] Tax=RIFCSPLOWO2
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (EC:6.3.2.-); K02558 UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.-] id=12555321 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (EC:6.3.2.-)
13_1_40cm_2_scaffold_804_24
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(20562..21485)
DNA (924bp) protein (308aa)
peptidase U61 LD-carboxypeptidase A; K01297 muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13] id=12555322 bin=CNBR_ACIDO species=Terriglobus saanensis genus=Terriglobus taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
putative MccF-like protein (microcin C7 resistance) Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein
13_1_40cm_2_scaffold_804_25
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(21485..22582)
DNA (1098bp) protein (366aa)
glycosyl hydrolase, family 3; K01207 beta-N-acetylhexosaminidase [EC:3.2.1.52] id=12555323 bin=CNBR_ACIDO species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
glycosyl hydrolase family protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
glucosyl hydrolase family protein
13_1_40cm_2_scaffold_804_26
unknown

Not on your lists

22649..22768
DNA (120bp) protein (40aa)

This feature has no annotations

Displaying 27 items

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