ggKbase | organisms

13_1_40CM_2_Acidobacteria_64_6

In projects: 13_1_40CM_2 | angelo_ncbi_2016 | meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Acidobacteria → Bacteria

Metagenomic Context

Parent: 13_1_40cm_2_UNK

Properties

Avg. coverage: 6.23 Longest contig: 35.57 Kbp Bin length: 1.46 Mbp GC content: 64.29 %

Contigs count: 411 Features count: 1516 rRNAs count: 0 tRNAs count: 9

Genome completeness

partial RP 45 / 55 MC: 10 BSCG 37 / 51 MC: 5 ASCG 9 / 38 MC: 1

Description

species level binning in ggKbase

Displaying items 151-200 of 411 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
13_1_40cm_2_scaffold_154344 Species: RBG_16_Gemmatimonadetes_66_8_curated (50%)	2	1537 bp	68.64	4.88	87.44
13_1_40cm_2_scaffold_320210 Species: Cupriavidus basilensis (50%)	2	1070 bp	55.51	8.41	98.69
13_1_40cm_2_scaffold_95297 Species: Sphingomonas changbaiensis (50%)	2	1952 bp	61.22	7.91	79.15
13_1_40cm_2_scaffold_276662 Species: RBG_16_Gemmatimonadetes_66_8_curated (100%)	2	1521 bp	67.72	7.30	97.24
13_1_40cm_2_scaffold_306859 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated (50%)	2	2183 bp	59.69	5.06	76.13
13_1_40cm_2_scaffold_409230 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated (50%)	2	1247 bp	65.12	8.90	82.04
13_1_40cm_2_scaffold_157107 Species: Parcubacteria bacterium GW2011_GWA1_50_14 (50%)	2	1523 bp	64.61	5.91	88.05
13_1_40cm_2_scaffold_226515 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated (100%)	2	2083 bp	64.04	6.41	70.86
13_1_40cm_2_scaffold_351349 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated (100%)	2	1006 bp	63.62	5.82	92.15
13_1_40cm_2_scaffold_283404 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated (50%)	2	1138 bp	57.73	6.72	88.05
13_1_40cm_2_scaffold_99392 Species: GWB1_OD1_50_17_partial (50%)	2	1911 bp	60.02	6.36	88.07
13_1_40cm_2_scaffold_176226 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated (100%)	2	1866 bp	64.04	5.71	76.05
13_1_40cm_2_scaffold_106901 Species: RLO_Gemmatimonadetes_68_9 (50%)	2	1845 bp	55.23	4.80	93.82
13_1_40cm_2_scaffold_123540 Species: Rubrivivax benzoatilyticus (50%)	2	1717 bp	68.96	5.85	100.47
13_1_40cm_2_scaffold_66742 Species: Pyrinomonas methylaliphatogenes (100%)	2	3041 bp	58.27	5.72	86.32
13_1_40cm_2_scaffold_285949 Species: RBG_16_Acidobacteria_70_10_curated (100%)	2	2048 bp	64.70	4.59	88.62
13_1_40cm_2_scaffold_391922 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated (50%)	2	1699 bp	64.10	4.79	86.34
13_1_40cm_2_scaffold_295716 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated (50%)	2	1115 bp	59.37	4.98	53.81
13_1_40cm_2_scaffold_176012 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated (50%)	2	1442 bp	70.39	7.18	94.24
13_1_40cm_2_scaffold_304894 Species: RBG_16_Acidobacteria_70_10_curated (50%)	2	1509 bp	68.85	4.57	101.39
13_1_40cm_2_scaffold_327180 Species: RBG_16_Planctomycetes_64_12_curated (50%)	2	1057 bp	73.42	7.52	88.84
13_1_40cm_2_scaffold_352842 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated (50%)	2	1002 bp	58.98	6.89	92.81
13_1_40cm_2_scaffold_158024 Species: R_Acidobacteria_67_21 (50%)	2	1519 bp	69.85	7.70	82.36
13_1_40cm_2_scaffold_265185 Species: R_Acidobacteria_67_21 (50%)	2	1177 bp	62.45	8.03	88.70
13_1_40cm_2_scaffold_185303 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated (50%)	2	1407 bp	64.68	5.33	97.87
13_1_40cm_2_scaffold_84396 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated (50%)	2	2070 bp	56.71	6.81	98.41
13_1_40cm_2_scaffold_256665 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated (50%)	2	1196 bp	60.79	6.27	92.06
13_1_40cm_2_scaffold_73745 Species: Candidatus Solibacter usitatus (50%)	2	2735 bp	61.65	5.65	58.14
13_1_40cm_2_scaffold_331173 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated (50%)	2	1049 bp	64.25	4.58	93.23
13_1_40cm_2_scaffold_461114 Species: GWF2_Verrucomicrobia_62_7_curated (50%)	2	1251 bp	71.46	8.15	72.90
13_1_40cm_2_scaffold_215033 Species: R_Acidobacteria_68_18 (100%)	2	1309 bp	65.01	4.58	97.40
13_1_40cm_2_scaffold_141329 Species: R_Acidobacteria_65_29 (100%)	2	1605 bp	64.17	6.64	99.81
13_1_40cm_2_scaffold_50627 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated (50%)	2	2628 bp	66.82	6.05	98.17
13_1_40cm_2_scaffold_351391 Species: R_Acidobacteria_67_21 (100%)	2	1006 bp	64.71	6.41	88.87
13_1_40cm_2_scaffold_197759 Species: R_Dadabacteria_53_21 (50%)	2	1364 bp	67.60	7.15	69.50
13_1_40cm_2_scaffold_53501 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated (50%)	2	2561 bp	64.66	6.56	81.65
13_1_40cm_2_scaffold_281372 Species: R_Acidobacteria_67_28 (50%)	2	1687 bp	61.83	9.38	72.38
13_1_40cm_2_scaffold_350997 Species: Pyrinomonas methylaliphatogenes (50%)	2	1006 bp	51.29	4.77	57.55
13_1_40cm_2_scaffold_572335 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated (50%)	2	1032 bp	55.43	7.85	55.81
13_1_40cm_2_scaffold_82524 Species: Azospirillum thiophilum (50%)	2	2092 bp	67.97	7.96	88.91
13_1_40cm_2_scaffold_139700 Species: Candidatus Koribacter versatilis (50%)	2	1615 bp	61.55	8.54	92.88
13_1_40cm_2_scaffold_161963 Species: RBG_16_Acidobacteria_70_10_curated (50%)	2	1501 bp	67.95	4.80	100.13
13_1_40cm_2_scaffold_64011 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated (50%)	2	2357 bp	62.75	6.11	95.84
13_1_40cm_2_scaffold_140393 Species: RLO_Entotheonella_69_37 (100%)	2	1611 bp	70.02	8.94	100.00
13_1_40cm_2_scaffold_340129 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated (50%)	2	1031 bp	59.46	4.51	98.06
13_1_40cm_2_scaffold_93242 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated (50%)	2	1973 bp	63.56	4.56	81.20
13_1_40cm_2_scaffold_61491 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated (100%)	2	2401 bp	60.39	4.94	59.98
13_1_40cm_2_scaffold_171273 Species: RBG_16_Acidobacteria_70_10_curated (100%)	2	1461 bp	69.47	6.37	99.79
13_1_40cm_2_scaffold_239769 Species: R_Acidobacteria_65_29 (50%)	2	1239 bp	64.49	5.57	94.43
13_1_40cm_2_scaffold_606580 Species: R_Acidobacteria_68_18 (50%)	2	1329 bp	57.34	4.97	98.65

Displaying items 151-200 of 411 in total

13_1_40CM_2_Acidobacteria_64_6

Description

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

13_1_40CM_2_Acidobacteria_64_6

Description

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Merge with other organism

Processing

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