ggKbase | organisms

13_1_40CM_2_Acidobacteria_64_6

In projects: 13_1_40CM_2 | angelo_ncbi_2016 | meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Acidobacteria → Bacteria

Metagenomic Context

Parent: 13_1_40cm_2_UNK

Properties

Avg. coverage: 6.23 Longest contig: 35.57 Kbp Bin length: 1.46 Mbp GC content: 64.29 %

Contigs count: 411 Features count: 1516 rRNAs count: 0 tRNAs count: 9

Genome completeness

partial RP 45 / 55 MC: 10 BSCG 37 / 51 MC: 5 ASCG 9 / 38 MC: 1

Description

species level binning in ggKbase

Displaying items 201-250 of 411 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
13_1_40cm_2_scaffold_180513 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated (50%)	2	1425 bp	69.26	5.47	92.42
13_1_40cm_2_scaffold_91247 Species: GWB1_Spirochaetes_59_5_curated (50%)	2	2490 bp	56.06	4.75	99.76
13_1_40cm_2_scaffold_224038 Species: R_Acidobacteria_65_29 (50%)	2	1282 bp	72.07	5.85	97.58
13_1_40cm_2_scaffold_233968 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated (50%)	2	1254 bp	66.59	4.67	103.83
13_1_40cm_2_scaffold_190630 Species: R_Acidobacteria_67_28 (50%)	2	1388 bp	63.11	8.65	90.56
13_1_40cm_2_scaffold_107277 Species: R_Acidobacteria_67_21 (50%)	2	2674 bp	66.27	4.98	95.81
13_1_40cm_2_scaffold_66781 Species: R_Acidobacteria_67_21 (50%)	2	2312 bp	64.01	6.23	96.28
13_1_40cm_2_scaffold_66349 Species: R_Acidobacteria_61_28 (50%)	2	2319 bp	66.49	6.08	100.00
13_1_40cm_2_scaffold_177941 Species: Rhodothermus marinus (50%)	2	2203 bp	60.55	4.63	72.45
13_1_40cm_2_scaffold_116532 Species: Pedosphaera parvula (50%)	2	1768 bp	68.95	4.58	99.43
13_1_40cm_2_scaffold_69731 Species: RLO_Gemmatimonadetes_68_9 (50%)	2	2267 bp	68.99	9.46	96.34
13_1_40cm_2_scaffold_48543 Species: R_Acidobacteria_61_28 (50%)	2	2677 bp	55.70	5.55	99.74
13_1_40cm_2_scaffold_62318 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated (50%)	2	5282 bp	57.57	6.34	94.96
13_1_40cm_2_scaffold_187019 Species: Sorangium cellulosum (50%)	2	2005 bp	69.73	5.01	77.96
13_1_40cm_2_scaffold_43996 Species: R_Acidobacteria_65_29 (50%)	2	2800 bp	59.64	5.73	92.89
13_1_40cm_2_scaffold_135761 Species: GWF2_Verrucomicrobia_62_7_curated (50%)	2	1638 bp	70.82	7.05	99.63
13_1_40cm_2_scaffold_227767 Species: RBG_16_Acidobacteria_70_10_curated (100%)	2	1271 bp	66.80	4.96	84.97
13_1_40cm_2_scaffold_133158 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated (50%)	2	2108 bp	63.47	8.69	81.97
13_1_40cm_2_scaffold_93520 Species: R_Acidobacteria_60_20 (50%)	2	1970 bp	57.26	5.25	92.28
13_1_40cm_2_scaffold_72472 Species: RIFOXYA2_FULL_Elusimicrobia_39_19_curated (50%)	2	2225 bp	42.88	8.16	90.34
13_1_40cm_2_scaffold_183282 Species: Anaeromyxobacter dehalogenans (50%)	2	1415 bp	74.84	4.77	100.07
13_1_40cm_2_scaffold_296893 Species: RBG_16_Acidobacteria_70_10_curated (100%)	2	1113 bp	68.19	4.85	85.71
13_1_40cm_2_scaffold_169150 Species: R_Betaproteobacteria_67_26 (50%)	2	1470 bp	70.82	8.06	94.29
13_1_40cm_2_scaffold_194321 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated (50%)	2	1375 bp	58.62	4.69	95.35
13_1_40cm_2_scaffold_121589 Species: CNBR_ACIDO (50%)	2	1731 bp	66.84	6.07	85.27
13_1_40cm_2_scaffold_674637 Species: R_Acidobacteria_65_29 (100%)	2	1017 bp	63.03	5.75	93.81
13_1_40cm_2_scaffold_228740 Species: Hyalangium minutum (50%)	2	1269 bp	54.22	6.86	53.19
13_1_40cm_2_scaffold_31026 Species: R_Acidobacteria_65_29 (50%)	2	3268 bp	55.72	5.69	88.77
13_1_40cm_2_scaffold_164144 Species: CG_Elusi_04 (50%)	2	3254 bp	57.78	7.53	100.22
13_1_40cm_2_scaffold_423811 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated (50%)	2	1452 bp	64.53	8.02	94.83
13_1_40cm_2_scaffold_165937 Species: Pyrinomonas methylaliphatogenes (50%)	2	1483 bp	60.96	4.55	93.46
13_1_40cm_2_scaffold_369355 Species: R_Acidobacteria_65_29 (100%)	2	2070 bp	57.54	5.60	76.67
13_1_40cm_2_scaffold_321414 Species: R_Acidobacteria_59_13 (50%)	2	1067 bp	62.51	6.33	99.25
13_1_40cm_2_scaffold_69386 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated (50%)	2	2272 bp	63.51	8.58	92.03
13_1_40cm_2_scaffold_271750 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated (50%)	2	1162 bp	60.93	5.81	76.68
13_1_40cm_2_scaffold_159994 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated (50%)	2	1510 bp	64.17	8.34	91.99
13_1_40cm_2_scaffold_126232 Species: Leptospira weilii (50%)	2	1699 bp	56.68	4.59	59.15
13_1_40cm_2_scaffold_356567 Species: Mariniradius saccharolyticus (50%)	2	1470 bp	62.86	9.08	100.20
13_1_40cm_2_scaffold_325628 Species: GWA2_OP3_50_21_curated (50%)	2	1060 bp	64.62	6.65	76.13
13_1_40cm_2_scaffold_209427 Species: Pyrinomonas methylaliphatogenes (50%)	2	1326 bp	57.84	6.45	98.42
13_1_40cm_2_scaffold_300835 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated (50%)	2	1105 bp	63.17	7.60	95.29
13_1_40cm_2_scaffold_536551 Species: RLO_Entotheonella_69_37 (100%)	2	1588 bp	67.38	8.50	65.18
13_1_40cm_2_scaffold_115504 Species: RBG_16_Acidobacteria_70_10_curated (100%)	2	1776 bp	64.30	4.90	85.30
13_1_40cm_2_scaffold_352240 Species: R_Acidobacteria_65_29 (50%)	2	1409 bp	65.51	5.64	76.65
13_1_40cm_2_scaffold_106549 Species: RLO_RIF_CHLX_71_12 (50%)	2	2805 bp	71.55	5.44	92.30
13_1_40cm_2_scaffold_217459 Species: RLO_Entotheonella_69_37 (100%)	2	1301 bp	67.41	6.80	92.93
13_1_40cm_2_scaffold_295060 Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (100%)	2	1116 bp	64.16	5.91	96.51
13_1_40cm_2_scaffold_232875 Species: Chondromyces apiculatus (50%)	2	1257 bp	63.01	4.53	85.44
13_1_40cm_2_scaffold_193897 Species: Candidatus Solibacter usitatus (100%)	2	1377 bp	54.10	5.45	91.50
13_1_40cm_2_scaffold_204098 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated (50%)	2	1342 bp	68.78	4.58	100.15

Displaying items 201-250 of 411 in total

13_1_40CM_2_Acidobacteria_64_6

Description

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

13_1_40CM_2_Acidobacteria_64_6

Description

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Merge with other organism

Processing

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