ggKbase home page

13_1_40cm_2_scaffold_11539

Search features with annotation key words

Displaying 20 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_11539_1
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

1..168
DNA (168bp) protein (56aa)
chaperone protein DnaJ Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_2_scaffold_11539_trna_1
unknown

Not on your lists

comp(281..354)
DNA (74bp)
transferRNA
13_1_40cm_2_scaffold_11539_2
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(396..1853)
DNA (1458bp) protein (486aa)
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
13_1_40cm_2_scaffold_11539_3
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(1857..2660)
DNA (804bp) protein (268aa)
ABC transporter related protein n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C7A3_SPHTD id=5224006 bin=16ft_combo_ws3_JS1 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
ABC transporter-like protein; K01990 ABC-2 type transport system ATP-binding protein Tax=RBG_16_Euryarchaeota_68_12_curated
ABC transporter-like protein
13_1_40cm_2_scaffold_11539_4
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(2737..3045)
DNA (309bp) protein (103aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00037D95B9
hypothetical protein Tax=RBG_16_Euryarchaeota_68_12_curated
hypothetical protein
13_1_40cm_2_scaffold_11539_5
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(3123..3935)
DNA (813bp) protein (271aa)
L-asparaginase (EC:3.5.1.1)
Putative L-asparaginase n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9GWH2_SORC5
hypothetical protein Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_2_scaffold_11539_6
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(4022..4489)
DNA (468bp) protein (156aa)
arsenate reductase (EC:1.20.4.1) Tax=RBG_16_Euryarchaeota_68_12_curated
arsenate reductase (EC:1.20.4.1)
Arsenate reductase n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IK34_NITGG
13_1_40cm_2_scaffold_11539_7
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

4841..5446
DNA (606bp) protein (202aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00036A149E
hypothetical protein Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_2_scaffold_11539_8
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(5430..5696)
DNA (267bp) protein (89aa)
single-stranded DNA-binding replication protein A, large (70 kD) subunit; K07466 replication factor A1 Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_2_scaffold_11539_9
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

5841..6152
DNA (312bp) protein (104aa)
Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_2_scaffold_11539_10
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

6285..6782
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI0003812A59
hypothetical protein Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
hypothetical protein
13_1_40cm_2_scaffold_11539_11
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

6786..7325
DNA (540bp) protein (180aa)
Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_2_scaffold_11539_12
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

7338..7853
DNA (516bp) protein (172aa)
hypothetical protein; K07254 tRNA (cytidine56-2'-O)-methyltransferase [EC:2.1.1.206] Tax=RBG_16_Euryarchaeota_68_12_curated
tRNA (cytidine(56)-2'-O)-methyltransferase n=1 Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5IA60_ACIB4
hypothetical protein
13_1_40cm_2_scaffold_11539_13
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(8028..8534)
DNA (507bp) protein (169aa)
Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_2_scaffold_11539_14
unknown

Not on your lists

comp(8613..8801)
DNA (189bp) protein (63aa)

This feature has no annotations

13_1_40cm_2_scaffold_11539_15
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(8798..9196)
DNA (399bp) protein (133aa)
Predicted transcriptional regulator n=1 Tax=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) RepID=A2BN43_HYPBU
hypothetical protein Tax=RBG_16_Euryarchaeota_68_12_curated
transcriptional regulator
13_1_40cm_2_scaffold_11539_16
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(9282..9497)
DNA (216bp) protein (72aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00036CF357
hypothetical protein Tax=RBG_16_Euryarchaeota_68_12_curated
hypothetical protein
13_1_40cm_2_scaffold_11539_17
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

9711..10253
DNA (543bp) protein (181aa)
Tax=RBG_16_Euryarchaeota_67_27_curated
13_1_40cm_2_scaffold_11539_18
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(10260..10676)
DNA (417bp) protein (139aa)
aspartate carbamoyltransferase regulatory subunit (EC:2.1.3.2) Tax=RBG_16_Euryarchaeota_68_12_curated
aspartate carbamoyltransferase regulatory subunit (EC:2.1.3.2)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00037AF864
13_1_40cm_2_scaffold_11539_19
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(10712..10987)
DNA (276bp) protein (92aa)
Aspartate carbamoyltransferase (EC:2.1.3.2) Tax=RBG_16_Euryarchaeota_68_12_curated
aspartate carbamoyltransferase (EC:2.1.3.2)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI0003827A60
Displaying 20 items

View Taxonomy