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13_1_40cm_2_scaffold_7002

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Displaying 24 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_7002_1
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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comp(1..144)
DNA (144bp) protein (48aa)
Ferredoxin n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N8Q4_9ARCH
ferredoxin Tax=RBG_16_Euryarchaeota_68_12_curated
ferredoxin
13_1_40cm_2_scaffold_7002_2
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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347..643
DNA (297bp) protein (99aa)
Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_2_scaffold_7002_3
RBG_13_Euryarchaeota_61_15_curated, Euryarchaeota, Archaea

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585..2195
DNA (1611bp) protein (537aa)
Uncharacterized protein n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I658_METCZ rbh
hypothetical protein Tax=RBG_13_Euryarchaeota_61_15_curated
hypothetical protein
13_1_40cm_2_scaffold_7002_4
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

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2280..2591
DNA (312bp) protein (104aa)
Tax=RBG_16_Euryarchaeota_68_13_curated
13_1_40cm_2_scaffold_7002_5
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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2750..2971
DNA (222bp) protein (74aa)
Putative RNA-binding protein, contains TRAM domain n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KZJ4_METHD
putative RNA-binding protein, contains TRAM domain Tax=RBG_16_Euryarchaeota_68_12_curated
hypothetical protein
13_1_40cm_2_scaffold_7002_6
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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3081..4088
DNA (1008bp) protein (336aa)
Marine sediment metagenome DNA, contig: S03H2_S08248 Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_2_scaffold_7002_7
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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4139..4402
DNA (264bp) protein (88aa)
Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_2_scaffold_7002_8
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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4419..4964
DNA (546bp) protein (182aa)
Transcriptional regulator, ArsR family n=1 Tax=Methanocaldococcus sp. (strain FS406-22) RepID=D3S4S6_METSF
hypothetical protein Tax=RBG_16_Euryarchaeota_68_12_curated
transcriptional regulator, ArsR family
13_1_40cm_2_scaffold_7002_9
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

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comp(5016..5516)
DNA (501bp) protein (167aa)
GAF domain protein n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L0G4_THERP
GAF domain-containing protein; K07170 GAF domain-containing protein Tax=RBG_16_Euryarchaeota_68_13_curated
putative GAF sensor protein
13_1_40cm_2_scaffold_7002_10
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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comp(5854..6495)
DNA (642bp) protein (214aa)
purN; phosphoribosylglycinamide formyltransferase; K11175 phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] Tax=RBG_16_Euryarchaeota_68_12_curated
formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase (EC:2.1.2.2)
Phosphoribosylglycinamide formyltransferase n=2 Tax=Megamonas RepID=H3K5S3_9FIRM
13_1_40cm_2_scaffold_7002_11
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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comp(6505..7233)
DNA (729bp) protein (243aa)
phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (EC:3.5.4.10); K00602 phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
imp cyclohydrolase; phosphoribosylaminoimidazolecarboxamide formyltransferase (EC:2.1.2.3 3.5.4.10); K00602 phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] id=5043644 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
purH; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
13_1_40cm_2_scaffold_7002_12
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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comp(8188..9132)
DNA (945bp) protein (315aa)
methylenetetrahydrofolate reductase; K00297 methylenetetrahydrofolate reductase (NADPH) [EC:1.5.1.20] Tax=RBG_16_Euryarchaeota_68_12_curated
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00037102BE
methylenetetrahydrofolate reductase
13_1_40cm_2_scaffold_7002_13
unknown

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9185..9964
DNA (780bp) protein (260aa)

This feature has no annotations

13_1_40cm_2_scaffold_7002_14
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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comp(9952..11085)
DNA (1134bp) protein (378aa)
Digeranylgeranylglycerophospholipid reductase 1 (EC:1.3.1.-)
Digeranylgeranylglycerophospholipid reductase n=1 Tax=Methanobacterium sp. MB1 RepID=U6EAB9_9EURY
digeranylgeranylglycerophospholipid reductase Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_2_scaffold_7002_15
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(11323..11565)
DNA (243bp) protein (81aa)
Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_2_scaffold_7002_16
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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comp(11562..11768)
DNA (207bp) protein (69aa)
Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_2_scaffold_7002_17
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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11874..12758
DNA (885bp) protein (295aa)
bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase (EC:3.5.4.9) Tax=RBG_16_Euryarchaeota_68_12_curated
bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase (EC:3.5.4.9)
Bifunctional protein FolD n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9TBV0_9EURY
13_1_40cm_2_scaffold_7002_18
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

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comp(12791..13561)
DNA (771bp) protein (257aa)
Putative uncharacterized protein n=1 Tax=Daphnia pulex RepID=E9HK69_DAPPU
Collagen triple helix repeat-containing protein
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
13_1_40cm_2_scaffold_7002_19
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

13858..15093
DNA (1236bp) protein (412aa)
phosphoribosylamine--glycine ligase (EC:6.3.4.13) Tax=RBG_16_Euryarchaeota_68_12_curated
purD; phosphoribosylamine-glycine ligase (EC:6.3.4.13)
Phosphoribosylamine--glycine ligase n=1 Tax=Methanothermobacter thermautotrophicus CaT2 RepID=T2GJ23_METTF
13_1_40cm_2_scaffold_7002_20
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

15149..15766
DNA (618bp) protein (206aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI000372E0F1
putative RNA-binding protein of the translin family Tax=RBG_16_Euryarchaeota_68_12_curated
putative RNA-binding protein of the translin family
13_1_40cm_2_scaffold_7002_21
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

15894..16802
DNA (909bp) protein (303aa)
ATPase RecA-superfamily n=1 Tax=uncultured euryarchaeote Alv-FOS4 RepID=Q3SA55_9EURY
putative circadian clock protein KaiC Tax=RBG_16_Euryarchaeota_68_12_curated
putative circadian clock protein KaiC
13_1_40cm_2_scaffold_7002_22
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

16811..17602
DNA (792bp) protein (264aa)
Putative uncharacterized protein n=1 Tax=uncultured euryarchaeote Alv-FOS4 RepID=Q3SA54_9EURY
hypothetical protein Tax=RBG_16_Euryarchaeota_68_12_curated
hypothetical protein
13_1_40cm_2_scaffold_7002_23
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

17631..18248
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XQF0_METZD
hypothetical protein Tax=RBG_16_Euryarchaeota_68_12_curated
hypothetical protein
13_1_40cm_2_scaffold_7002_24
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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18275..18775
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XQF1_METZD
hypothetical protein Tax=RBG_16_Euryarchaeota_68_12_curated
hypothetical protein
Displaying 24 items

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