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13_1_40cm_3_scaffold_10819

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_10819_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1..276
DNA (276bp) protein (92aa)
aspartate ammonia-lyase (EC:4.2.1.2); K01744 aspartate ammonia-lyase [EC:4.3.1.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
fumarase (EC:4.2.1.2)
Fumarate hydratase class II id=4866639 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_3_scaffold_10819_2
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

843..1634
DNA (792bp) protein (264aa)
phosphoesterase domain-containing protein Tax=GWA2_Rokubacteria_70_23_curated
Phosphoesterase, RecJ domain protein id=4139262 bin=GWF2_Methylomirabilis_70_14 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_3_scaffold_10819_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

1631..2935
DNA (1305bp) protein (435aa)
Mg/Co/Ni transporter; K06213 magnesium transporter Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
magnesium transporter; K06213 magnesium transporter id=14626380 bin=bin7_NC10_sister species=Herpetosiphon aurantiacus genus=Herpetosiphon taxon_order=Herpetosiphonales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
Mg/Co/Ni transporter
13_1_40cm_3_scaffold_10819_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3050..3679
DNA (630bp) protein (210aa)
pmtA; phosphatidylethanolamine N-methyltransferase (EC:2.1.1.17) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
pmtA; phosphatidylethanolamine N-methyltransferase (EC:2.1.1.17)
Similar to phosphatidylethanolamine N-methyltransferase id=4866643 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_3_scaffold_10819_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3886..4995
DNA (1110bp) protein (370aa)
LysM domain-containing protein 2; K08086 pilus assembly protein FimV Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=3824567 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
FecR protein
13_1_40cm_3_scaffold_10819_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5099..6256
DNA (1158bp) protein (386aa)
LysM domain-containing protein 2; K08086 pilus assembly protein FimV Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
WGS project CABT00000000 data, contig 2.14 id=3824668 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_3_scaffold_10819_7
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(6317..6931)
DNA (615bp) protein (205aa)
Exported protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hypothetical protein id=14627165 bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_3_scaffold_10819_8
unknown

Not on your lists

7014..8000
DNA (987bp) protein (329aa)

This feature has no annotations

13_1_40cm_3_scaffold_10819_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7835..9277)
DNA (1443bp) protein (481aa)
two component sigma54 specific Fis family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
AtoC; response regulator; K07714 two-component system, NtrC family, response regulator AtoC id=14626375 bin=bin7_NC10_sister species=Desulfotignum phosphitoxidans genus=Desulfotignum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10 rbh
Fis family transcriptional regulator
13_1_40cm_3_scaffold_10819_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(9274..10689)
DNA (1416bp) protein (472aa)
degQ; protease degQ (EC:3.4.21.-); K04772 serine protease DegQ [EC:3.4.21.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Protease Do id=4681947 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
degQ; periplasmic trypsin-like serine protease lipoprotein DegQ
13_1_40cm_3_scaffold_10819_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10722..11873)
DNA (1152bp) protein (384aa)
tRNA(Ile)-lysidine synthetase; K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
tRNA(Ile)-lysidine synthase id=4681946 bin=GWA2_Methylomirabilis_73_35 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
tRNA(Ile)-lysidine synthetase
13_1_40cm_3_scaffold_10819_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(12060..12731)
DNA (672bp) protein (224aa)
moaDE; molybdopterin converting factor, subunits 1/2; K03635 molybdopterin synthase catalytic subunit [EC:2.-.-.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
molybdopterin converting factor subunit 1; K03635 molybdopterin synthase catalytic subunit [EC:2.-.-.-] id=14626372 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
MoaD family protein
13_1_40cm_3_scaffold_10819_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(12750..13076)
DNA (327bp) protein (109aa)
iscA; iron-binding protein IscA (iron-sulfur cluster assembly protein) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Iron-binding protein IscA (Iron-sulfur cluster assembly protein) id=4681944 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
yutM; hypothetical protein
13_1_40cm_3_scaffold_10819_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13115..13834)
DNA (720bp) protein (240aa)
short chain dehydrogenase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
GTP cyclohydrolase I id=4681943 bin=GWA2_Methylomirabilis_73_35 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
short chain dehydrogenase
13_1_40cm_3_scaffold_10819_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13831..14412)
DNA (582bp) protein (194aa)
folE; GTP cyclohydrolase I (EC:3.5.4.16) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
folE; GTP cyclohydrolase I (EC:3.5.4.16) id=14626369 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
GTP cyclohydrolase (EC:3.5.4.16)
13_1_40cm_3_scaffold_10819_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14409..14813)
DNA (405bp) protein (135aa)
pts; 6-pyruvoyl-tetrahydropterin synthase (EC:4.2.3.12); K01737 6-pyruvoyl tetrahydrobiopterin synthase [EC:4.2.3.12] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
6-carboxy-5,6,7,8-tetrahydropterin synthase id=4681942 bin=GWA2_Methylomirabilis_73_35 species=Gracilibacillus halophilus genus=Gracilibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_3_scaffold_10819_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(14810..15226)
DNA (417bp) protein (139aa)
putative 6-pyruvoyl tetrahydropterin synthase; K01737 6-pyruvoyl tetrahydrobiopterin synthase [EC:4.2.3.12] Tax=GWA2_Rokubacteria_73_35_curated
Putative uncharacterized protein id=4534447 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_3_scaffold_10819_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15223..16281)
DNA (1059bp) protein (353aa)
group 1 glycosyl transferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glycosyl transferase, group 1 id=4681940 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
group 1 glycosyl transferase
13_1_40cm_3_scaffold_10819_19
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(16292..16549)
DNA (258bp) protein (86aa)
enoyl-CoA hydratase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Enoyl-CoA hydratase/isomerase id=4534449 bin=GWF2_Methylomirabilis_70_14 species=Mycobacterium tusciae genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
enoyl-CoA hydratase
13_1_40cm_3_scaffold_10819_trna_1
unknown

Not on your lists

comp(17111..17182)
DNA (72bp)
transferRNA
13_1_40cm_3_scaffold_10819_20
Helobdella robusta, Helobdella, Rhynchobdellida, Hirudinea, Annelida, Metazoa

Not on your lists

17324..17515
DNA (192bp) protein (64aa)
Uncharacterized protein {ECO:0000313|EMBL:ESO09066.1, ECO:0000313|EnsemblMetazoa:HelroP169003}; TaxID=6412 species="Eukaryota; Metazoa; Lophotrochozoa; Annelida; Clitellata; Hirudinida; Hirudinea; Rhy
13_1_40cm_3_scaffold_10819_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

17598..18326
DNA (729bp) protein (243aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=14626359 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_3_scaffold_10819_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18398..18718)
DNA (321bp) protein (107aa)
lipoprotein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
lipoprotein id=14626358 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
lipoprotein
13_1_40cm_3_scaffold_10819_23
unknown

Not on your lists

comp(18796..19116)
DNA (321bp) protein (107aa)

This feature has no annotations

13_1_40cm_3_scaffold_10819_24
unknown

Not on your lists

comp(19113..19505)
DNA (393bp) protein (131aa)

This feature has no annotations

13_1_40cm_3_scaffold_10819_25
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19974..21014
DNA (1041bp) protein (347aa)
Uncharacterized protein n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q08WR9_STIAD
Uncharacterized protein {ECO:0000313|EMBL:EAU64929.1}; TaxID=378806 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source="Sti
fhlA; transcriptional regulator
Displaying 26 items

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