ggKbase home page

13_1_40cm_3_scaffold_1050

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_1050_1
unknown

Not on your lists

2..94
DNA (93bp) protein (31aa)

This feature has no annotations

13_1_40cm_3_scaffold_1050_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(324..1751)
DNA (1428bp) protein (476aa)
ntrC; nitrogen regulation protein NR(I); K07712 two-component system, NtrC family, nitrogen regulation response regulator GlnG Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative Nitrogen assimilation transcription regulatory protein (NtrC)(Synonyms:glnT, glnG) id=2650854 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
two component sigma-54 specific Fis family transcriptional regulator
13_1_40cm_3_scaffold_1050_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(1918..2967)
DNA (1050bp) protein (350aa)
signal transduction histidine kinase, nitrogen specific, NtrB (EC:2.7.13.3); K07708 two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] Tax=RIFCSPLOWO2_12
signal transduction histidine kinase, nitrogen specific, NtrB (EC:2.7.13.3); K07708 two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] id=14627408 bin=bin7_NC10_sister species=Geobacter daltonii genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
signal transduction histidine kinase, nitrogen specific, NtrB (EC:2.7.13.3)
13_1_40cm_3_scaffold_1050_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


comp(3378..4382)
DNA (1005bp) protein (335aa)
O-sialoglycoprotein endopeptidase; K01409 O-sialoglycoprotein endopeptidase [EC:3.4.24.57] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
O-sialoglycoprotein endopeptidase; K01409 O-sialoglycoprotein endopeptidase [EC:3.4.24.57] id=14627409 bin=bin7_NC10_sister species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
O-sialoglycoprotein endopeptidase, with actin-like ATPase domain (ygjD,gcp)
13_1_40cm_3_scaffold_1050_5
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(4560..5702)
DNA (1143bp) protein (381aa)
ctpA; Carboxy-terminal-processing protease (C-terminal-processing protease) (EC:3.4.21.102) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
ctpA; Carboxy-terminal-processing protease (C-terminal-processing protease) (EC:3.4.21.102) id=14627410 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
ctpA; Carboxy-terminal-processing protease (C-terminal-processing protease) (EC:3.4.21.102)
13_1_40cm_3_scaffold_1050_6
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(5724..6947)
DNA (1224bp) protein (408aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hypothetical protein id=14627411 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_3_scaffold_1050_7
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(6917..7801)
DNA (885bp) protein (295aa)
cell division protein FtsX; K09811 cell division transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative Cell division protein FtsX id=4608922 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
cell division protein
13_1_40cm_3_scaffold_1050_8
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(7808..8479)
DNA (672bp) protein (224aa)
cell division ATP-binding protein FtsE Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Cell division ATP-binding protein FtsE id=4795613 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Desulfosporosinus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
cell division ATP-binding protein FtsE
13_1_40cm_3_scaffold_1050_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(8504..9823)
DNA (1320bp) protein (440aa)
gatB; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (Asp/Glu-ADT subunit B) (EC:6.3.5.-) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
gatB; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (Asp/Glu-ADT subunit B) (EC:6.3.5.-) id=14627414 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
gatB; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (Asp/Glu-ADT subunit B) (EC:6.3.5.-)
13_1_40cm_3_scaffold_1050_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10007..11458)
DNA (1452bp) protein (484aa)
gatA; glutamyl-tRNA(Gln) amidotransferase subunit A (Glu-ADT subunit A) (EC:6.3.5.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
aspartyl/glutamyl-tRNA amidotransferase subunit A (EC:6.3.5.-)
Glutamyl-tRNA(Gln) amidotransferase subunit A id=4608917 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_3_scaffold_1050_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11458..11745)
DNA (288bp) protein (96aa)
gatC; glutamyl-tRNA(Gln) amidotransferase subunit C (EC:6.3.5.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
gatC; glutamyl-tRNA(Gln) amidotransferase subunit C (EC:6.3.5.-) id=14627416 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
gatC; glutamyl-tRNA(Gln) amidotransferase subunit C (EC:6.3.5.-)
13_1_40cm_3_scaffold_1050_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(11762..14995)
DNA (3234bp) protein (1078aa)
pcrA; ATP-dependent DNA helicase PcrA (EC:3.6.1.-) Tax=GWA2_Rokubacteria_73_35_curated
pcrA; ATP-dependent DNA helicase PcrA (EC:3.6.1.-)
ATP-dependent DNA helicase PcrA id=4783127 bin=GWA2_Methylomirabilis_73_35 species=Clostridium acidurici genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_3_scaffold_1050_13
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(15076..16914)
DNA (1839bp) protein (613aa)
glmS; L-glutamine:D-fructose-6-phosphate aminotransferase (EC:2.6.1.16) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
glmS; L-glutamine:D-fructose-6-phosphate aminotransferase (EC:2.6.1.16)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] id=4783126 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_3_scaffold_1050_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16917..18296)
DNA (1380bp) protein (460aa)
glmU; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; K04042 bifunctional UDP-N-acetylglucosamine pyrophosphorylase / Glucosamine-1-phosphate
UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase id=4608909 bin=GWC2_Methylomirabilis_70_24 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
glmU; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase
13_1_40cm_3_scaffold_1050_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18337..19281)
DNA (945bp) protein (315aa)
RluA family pseudouridine synthase; K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
pseudouridine synthase id=2650586 bin=GWF2_Methylomirabilis_70_14 species=Sporolactobacillus inulinus genus=Sporolactobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
probable pseudouridine synthase
13_1_40cm_3_scaffold_1050_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(19285..19797)
DNA (513bp) protein (171aa)
lspA; lipoprotein signal peptidase (EC:3.4.23.36); K03101 signal peptidase II [EC:3.4.23.36] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Lipoprotein signal peptidase id=4006792 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
lipoprotein signal peptidase
13_1_40cm_3_scaffold_1050_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(19860..22208)
DNA (2349bp) protein (783aa)
ileS; isoleucine tRNA synthetase (EC:6.1.1.5) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ileS; isoleucine tRNA synthetase (EC:6.1.1.5)
Isoleucine--tRNA ligase id=2650578 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Displaying 17 items

View Taxonomy