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13_1_40cm_3_scaffold_171

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_171_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2..226)
DNA (225bp) protein (75aa)
twitching motility protein; K02669 twitching motility protein PilT Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Twitching motility pilus retraction ATPase id=4686860 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
twitching motility protein
13_1_40cm_3_scaffold_171_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(255..1991)
DNA (1737bp) protein (579aa)
type II secretion system protein E; K02652 type IV pilus assembly protein PilB Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Type IV-A pilus assembly ATPase PilB id=3773045 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
type II secretion system protein E
13_1_40cm_3_scaffold_171_3

Not on your lists

2231..2467
DNA (237bp) protein (79aa)
Uncharacterized protein {ECO:0000313|EMBL:KKM07377.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
13_1_40cm_3_scaffold_171_4
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(2481..3290)
DNA (810bp) protein (270aa)
protein mazG Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Protein mazG id=4311465 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
protein mazG
13_1_40cm_3_scaffold_171_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

3514..3735
DNA (222bp) protein (74aa)
Putative uncharacterized protein id=4311464 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_3_scaffold_171_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3719..4351)
DNA (633bp) protein (211aa)
hypothetical protein id=4311463 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_3_scaffold_171_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

4533..5009
DNA (477bp) protein (159aa)
Heat shock protein Hsp20 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Heat shock protein Hsp20 id=4311462 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Heat shock protein Hsp20
13_1_40cm_3_scaffold_171_8
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

5093..7006
DNA (1914bp) protein (638aa)
dnaK; chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa protein) (HSP70) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
dnaK; chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa protein) (HSP70) id=14625666 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
dnaK; chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa protein) (HSP70)
13_1_40cm_3_scaffold_171_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7014..7901
DNA (888bp) protein (296aa)
Zn finger domain-containing DnaJ-class molecular chaperone; K03686 molecular chaperone DnaJ Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
DnaJ-class molecular chaperone with C-terminal Zn finger domain id=3544317 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Zn finger domain-containing DnaJ-class molecular chaperone
13_1_40cm_3_scaffold_171_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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7898..8287
DNA (390bp) protein (130aa)
Transcriptional regulator id=3544313 bin=GWA2_Methylomirabilis_73_35 species=Hydrogenivirga sp. 128-5-R1-1 genus=Hydrogenivirga taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transcriptional regulator; K13640 MerR family transcriptional regulator, heat shock protein HspR Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
transcriptional regulator
13_1_40cm_3_scaffold_171_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8308..10701
DNA (2394bp) protein (798aa)
ATP-dependent proteinase. Serine peptidase. MEROPS family S16 (EC:3.4.21.53) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ATP-dependent proteinase. Serine peptidase. MEROPS family S16 (EC:3.4.21.53) id=14625663 bin=bin7_NC10_sister species=Chthonomonas calidirosea genus=Chthonomonas taxon_order=Chthonomonadales taxon_class=Chthonomonadetes phylum=Armatimonadetes tax=bin7_NC10_sister organism_group=NC10 rbh
ATP-dependent proteinase. Serine peptidase. MEROPS family S16 (EC:3.4.21.53)
13_1_40cm_3_scaffold_171_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10781..11455
DNA (675bp) protein (225aa)
Lytic transglycosylase, catalytic Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Lytic transglycosylase, catalytic id=3544309 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
Lytic transglycosylase, catalytic
13_1_40cm_3_scaffold_171_13
Burkholderia mallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11549..12340)
DNA (792bp) protein (264aa)
alpha/beta hydrolase fold family protein
Alpha/beta hydrolase fold family protein {ECO:0000313|EMBL:KGC13330.1}; TaxID=13373 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei
putative hydrolase protein id=14629277 bin=bin8_Chloro species=Rhizobium etli genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin8_Chloro organism_group=Chloroflexi
13_1_40cm_3_scaffold_171_14
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12800..13039
DNA (240bp) protein (80aa)
hypothetical protein Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
hypothetical protein id=14431410 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=Zetaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
13_1_40cm_3_scaffold_171_15
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13060..13314
DNA (255bp) protein (85aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJP49214.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
id=14431409 bin=bin3_NC10 tax=bin3_NC10 organism_group=NC10
13_1_40cm_3_scaffold_171_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13382..14908)
DNA (1527bp) protein (509aa)
Mg chelatase subunit ChlI; K07391 magnesium chelatase family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
transcriptional regulator id=14625658 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
comM; competence ATPase ComM
13_1_40cm_3_scaffold_171_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15070..16449
DNA (1380bp) protein (460aa)
two component, sigma54 specific, transcriptional regulator, Fis family; K07714 two-component system, NtrC family, response regulator AtoC Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Two component system response regulator, sigma54-specific id=4571215 bin=GWF2_Methylomirabilis_70_14 species=Desulfobacula toluolica genus=Desulfobacula taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
two component system response regulator, sigma54-specific
13_1_40cm_3_scaffold_171_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

16659..16802
DNA (144bp) protein (48aa)
id=4571218 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_3_scaffold_171_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

16831..18429
DNA (1599bp) protein (533aa)
ABC-type dipeptide transport system, periplasmic component Tax=GWA2_Rokubacteria_73_35_curated
ABC-type dipeptide transport system, periplasmic component id=2654072 bin=GWC2_Methylomirabilis_70_24 species=Halobacteroides halobius genus=Halobacteroides taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
ABC-type dipeptide transport system, periplasmic component
13_1_40cm_3_scaffold_171_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

18426..20321
DNA (1896bp) protein (632aa)
two component system sensor histidine kinase (EC:2.7.13.3) Tax=GWA2_Rokubacteria_73_35_curated
two component system sensor histidine kinase (EC:2.7.13.3)
Two component system sensor histidine kinase id=3368252 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacula toluolica genus=Desulfobacula taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_1_40cm_3_scaffold_171_21
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

20318..21469
DNA (1152bp) protein (384aa)
putative hybrid sensor histidine kinase (EC:2.7.13.3) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
putative hybrid sensor histidine kinase (EC:2.7.13.3)
Putative Hybrid sensor histidine kinase id=3368251 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_3_scaffold_171_22
BJP_IG2069_Chloroflexi_70_12, Chloroflexi, Bacteria

Not on your lists

comp(21691..22425)
DNA (735bp) protein (245aa)
Tax=BJP_IG2069_Chloroflexi_70_12
13_1_40cm_3_scaffold_171_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(22440..22925)
DNA (486bp) protein (162aa)
putative competence-damaged protein, CinA like protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Competence/damage-inducible protein cinA id=4829158 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
putative competence-damaged protein, CinA like protein
13_1_40cm_3_scaffold_171_24
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(22985..23977)
DNA (993bp) protein (331aa)
two component, sigma54 specific, Fis family transcriptional regulator id=14627680 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
two component, sigma54 specific, Fis family transcriptional regulator Tax=CSP1_6_Rokubacteria
two component sigma54 specific Fis family transcriptional regulator
13_1_40cm_3_scaffold_171_25
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(24215..24892)
DNA (678bp) protein (226aa)
putative two-component histidine kinase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Histidine kinase id=1767179 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sensor histidine kinase
13_1_40cm_3_scaffold_171_26
unknown

Not on your lists

25124..25579
DNA (456bp) protein (152aa)

This feature has no annotations

13_1_40cm_3_scaffold_171_27
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25801..26964)
DNA (1164bp) protein (388aa)
Acyl-CoA dehydrogenase domain protein n=1 Tax=Desulfatibacillum alkenivorans (strain AK-01) RepID=B8FIW6_DESAA
Uncharacterized protein {ECO:0000313|EMBL:ETX04111.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
acyl-CoA dehydrogenase domain-containing protein
13_1_40cm_3_scaffold_171_28
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26966..27616)
DNA (651bp) protein (217aa)
Uncharacterized protein {ECO:0000313|EMBL:ETX00467.1}; Flags: Fragment;; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheone
Acyl-CoA dehydrogenase domain protein id=4347745 bin=GWC2_Methylomirabilis_70_16 species=marine gamma proteobacterium HTCC2143 genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
acyl-CoA dehydrogenase domain-containing protein
Displaying 28 items

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