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13_1_40cm_3_scaffold_1744

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_1744_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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3..824
DNA (822bp) protein (274aa)
gcvPA; GcvPA; K00282 glycine dehydrogenase subunit 1 [EC:1.4.4.2] Tax=GWA2_Rokubacteria_73_35_curated
Probable glycine dehydrogenase [decarboxylating] subunit 1 id=4193476 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum hydrothermale genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glycine dehydrogenase subunit 1
13_1_40cm_3_scaffold_1744_2
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

824..2287
DNA (1464bp) protein (488aa)
glycine dehydrogenase subunit 2 (EC:1.4.4.2); K00283 glycine dehydrogenase subunit 2 [EC:1.4.4.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
glycine dehydrogenase subunit 2 (EC:1.4.4.2); K00283 glycine dehydrogenase subunit 2 [EC:1.4.4.2] id=14628075 bin=bin7_NC10_sister species=Geobacillus sp. GHH01 genus=Geobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
glycine dehydrogenase (EC:1.4.4.2)
13_1_40cm_3_scaffold_1744_3
R_Burkholderiales_61_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2322..3167
DNA (846bp) protein (282aa)
Putative uncharacterized protein n=1 Tax=gamma proteobacterium IMCC2047 RepID=F3KFQ2_9GAMM
type 11 methyltransferase Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
type 11 methyltransferase
13_1_40cm_3_scaffold_1744_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3121..3987
DNA (867bp) protein (289aa)
lipoate protein ligase; K03800 lipoate-protein ligase A [EC:2.7.7.63] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Octanoyltransferase LipM id=5020377 bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
biotin/lipoate A/B protein ligase
13_1_40cm_3_scaffold_1744_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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3984..4424
DNA (441bp) protein (147aa)
NUDIX family hydrolase id=5020378 bin=GWA2_Methylomirabilis_73_35 species=Thermoproteus tenax genus=Thermoproteus taxon_order=Thermoproteales taxon_class=Thermoprotei phylum=Crenarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
NUDIX family hydrolase Tax=GWA2_Rokubacteria_73_35_curated
NUDIX hydrolase
13_1_40cm_3_scaffold_1744_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4729..5889
DNA (1161bp) protein (387aa)
cytosol aminopeptidase (LAP) (Leucyl aminopeptidase) PepA (EC:3.4.11.1) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
leucyl aminopeptidase (EC:3.4.11.1)
Probable cytosol aminopeptidase id=5020379 bin=GWA2_Methylomirabilis_73_35 species=ACD20 genus=ACD20 taxon_order=ACD20 taxon_class=ACD20 phylum=Melainabacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_3_scaffold_1744_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5891..6748
DNA (858bp) protein (286aa)
PHP domain-containing protein; K07053 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PHP domain protein id=5020380 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
metal-dependent phosphoesterase
13_1_40cm_3_scaffold_1744_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6775..7158
DNA (384bp) protein (128aa)
ArsC family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ArsC family protein id=5020381 bin=GWA2_Methylomirabilis_73_35 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
arsenate reductase like protein
13_1_40cm_3_scaffold_1744_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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7119..8318
DNA (1200bp) protein (400aa)
epoxide hydrolase (EC:3.3.2.9); K01253 microsomal epoxide hydrolase [EC:3.3.2.9] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein OPAG_01638 id=2521458 bin=GWC2_Methylomirabilis_70_16 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Putative epoxide hydrolase
13_1_40cm_3_scaffold_1744_10
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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comp(8453..8836)
DNA (384bp) protein (128aa)
hypothetical protein id=14628067 bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
hypothetical protein Tax=CSP1_6_Rokubacteria
hypothetical protein
13_1_40cm_3_scaffold_1744_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(8865..10154)
DNA (1290bp) protein (430aa)
major facilitator transporter Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Major facilitator superfamily MFS_1 id=5020383 bin=GWA2_Methylomirabilis_73_35 species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
major facilitator transporter
13_1_40cm_3_scaffold_1744_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(10162..11097)
DNA (936bp) protein (312aa)
Thioesterase superfamily protein id=5020384 bin=GWA2_Methylomirabilis_73_35 species=Nitrolancetus hollandicus genus=Nitrolancetus taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
Thioesterase superfamily protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_3_scaffold_1744_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11112..12293
DNA (1182bp) protein (394aa)
transport protein, belonging to the Major Facilitator Superfamily, of which narK is a member Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative transport protein, belonging to the Major Facilitator Superfamily, of which narK is a member id=4165967 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transport protein, belonging to the Major Facilitator Superfamily, of which narK is a member
13_1_40cm_3_scaffold_1744_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12340..12879
DNA (540bp) protein (180aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=5020386 bin=GWA2_Methylomirabilis_73_35 species=Desulfonatronospira thiodismutans genus=Desulfonatronospira taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_3_scaffold_1744_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12885..13826
DNA (942bp) protein (314aa)
pan; proteasome-activating nucleotidase; K03420 proteasome regulatory subunit Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Proteasome-activating nucleotidase id=4165965 bin=GWF2_Methylomirabilis_70_14 species=Thermosphaera aggregans genus=Thermosphaera taxon_order=Desulfurococcales taxon_class=Thermoprotei phylum=Crenarchaeota tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
AAA family ATPase, CDC48 subfamily
13_1_40cm_3_scaffold_1744_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

13828..14232
DNA (405bp) protein (135aa)
thioesterase superfamily protein; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=4830683 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
4-hydroxybenzoyl-CoA thioesterase
13_1_40cm_3_scaffold_1744_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

14268..15236
DNA (969bp) protein (323aa)
ABC transporter Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ABC transporter id=14626741 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
ABC transporter
13_1_40cm_3_scaffold_1744_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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15233..16000
DNA (768bp) protein (256aa)
multi-copper enzyme maturation ABC transporter permease Tax=GWA2_Rokubacteria_73_35_curated
multi-copper enzyme maturation ABC transporter permease id=14626740 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
multi-copper enzyme maturation ABC transporter permease
13_1_40cm_3_scaffold_1744_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15997..17520
DNA (1524bp) protein (508aa)
gliding motility ABC transporter auxillary protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative ABC-type uncharacterized transport system involved in gliding motility auxiliary component-like id=4034167 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
gliding motility ABC transporter auxillary protein
13_1_40cm_3_scaffold_1744_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17531..19297
DNA (1767bp) protein (589aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=4034165 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hypothetical protein
13_1_40cm_3_scaffold_1744_21
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(19298..20263)
DNA (966bp) protein (322aa)
hypothetical protein n=1 Tax=Salinispora pacifica RepID=UPI00036724AA
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
hypothetical protein
13_1_40cm_3_scaffold_1744_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(20330..20941)
DNA (612bp) protein (204aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=4034163 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_3_scaffold_1744_23
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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21127..21546
DNA (420bp) protein (140aa)
Beta-lactamase-like id=4034158 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Beta-lactamase-like Tax=GWA2_Rokubacteria_73_35_curated
Beta-lactamase-like
Displaying 23 items

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