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13_1_40cm_3_scaffold_1880

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_1880_1
Methanosarcina mazei, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(2..517)
DNA (516bp) protein (172aa)
Dystroglycan-type cadherin-like domain repeat protein n=3 Tax=Geobacter metallireducens RepID=Q39X49_GEOMG
Cell surface protein {ECO:0000313|EMBL:AKB61543.1}; TaxID=1434115 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina maze
dystroglycan-type cadherin-like protein
13_1_40cm_3_scaffold_1880_2
GWE2_Gammaproteobacteria_37_16_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(514..3372)
DNA (2859bp) protein (953aa)
Putative uncharacterized protein n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LG17_SYNFM
transmembrane protein (fibronectin III domain and Gp5 C-terminal repeat) Tax=GWE2_Gammaproteobacteria_37_16_curated
OmpA domain-containing protein
13_1_40cm_3_scaffold_1880_3
RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3407..5743)
DNA (2337bp) protein (779aa)
peptidase S8/S53 subtilisin kexin sedolisin Tax=RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated
Serine protease, subtilase family id=3491489 bin=GWC2_Chloroflexi_73_18 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
subtilase family serine protease
13_1_40cm_3_scaffold_1880_4
unknown

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comp(6330..6896)
DNA (567bp) protein (189aa)

This feature has no annotations

13_1_40cm_3_scaffold_1880_5
GWA2_Elusimicrobia_69_24_curated, Elusimicrobia, Bacteria

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comp(6893..7390)
DNA (498bp) protein (166aa)
hypothetical protein id=4206016 bin=GWA2_Elusimicrobia_69_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
hypothetical protein Tax=GWA2_Elusimicrobia_69_24_curated
13_1_40cm_3_scaffold_1880_6
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(7374..8846)
DNA (1473bp) protein (491aa)
id=4331126 Tax=GWC2_Rokubacteria_70_16_curated
13_1_40cm_3_scaffold_1880_7
unknown

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8891..9331
DNA (441bp) protein (147aa)

This feature has no annotations

13_1_40cm_3_scaffold_1880_8
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(9363..10745)
DNA (1383bp) protein (461aa)
Two component, sigma54 specific, transcriptional regulator, Fis family id=4331079 bin=GWC2_Methylomirabilis_70_16 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
two component sigma54 specific Fis family transcriptional regulator Tax=GWC2_Rokubacteria_70_16_curated
NtrC family two-component response regulator
13_1_40cm_3_scaffold_1880_9
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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comp(10846..12258)
DNA (1413bp) protein (471aa)
sensory histidine kinase AtoS (EC:2.7.13.3)
Signal transduction histidine kinase, nitrogen specific, NtrB id=2972844 bin=GWC2_Methylomirabilis_70_24 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
signal transduction histidine kinase, nitrogen specific, NtrB Tax=GWA2_Rokubacteria_70_23_curated
13_1_40cm_3_scaffold_1880_10
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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comp(12255..13253)
DNA (999bp) protein (333aa)
Type 4 fimbrial assembly protein pilC id=2972849 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
pilC; type 4 fimbrial assembly protein pilC Tax=GWA2_Rokubacteria_70_23_curated
type II secretion system protein
13_1_40cm_3_scaffold_1880_11
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(13452..15179)
DNA (1728bp) protein (576aa)
General secretory pathway protein E id=4331115 bin=GWC2_Methylomirabilis_70_16 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
general secretory pathway protein E; K02652 type IV pilus assembly protein PilB Tax=GWC2_Rokubacteria_70_16_curated
pilB; type IV pilus biogenesis ATPase PilB
13_1_40cm_3_scaffold_1880_12
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(15176..15568)
DNA (393bp) protein (131aa)
TPR repeat-containing protein id=4331116 bin=GWC2_Methylomirabilis_70_16 species=Methylosinus trichosporium genus=Methylosinus taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
TPR domain protein Tax=GWC2_Rokubacteria_70_16_curated
13_1_40cm_3_scaffold_1880_13
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(15609..18386)
DNA (2778bp) protein (926aa)
Candidate general secretion pathway protein A id=4331117 bin=GWC2_Methylomirabilis_70_16 species=Ramlibacter tataouinensis genus=Ramlibacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
gspA; general secretion pathway protein A; K02450 general secretion pathway protein A Tax=GWC2_Rokubacteria_70_16_curated
gspA; general secretion pathway protein A
13_1_40cm_3_scaffold_1880_14
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(18383..18976)
DNA (594bp) protein (198aa)
type IV pilus secretin PilQ; K02666 type IV pilus assembly protein PilQ Tax=GWA2_Rokubacteria_70_23_curated
Type IV pilus secretin PilQ id=2973093 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_3_scaffold_1880_15
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(18973..19956)
DNA (984bp) protein (328aa)
FliK family protein id=4331121 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
FliK family protein Tax=GWC2_Rokubacteria_70_16_curated
13_1_40cm_3_scaffold_1880_16
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(19953..20588)
DNA (636bp) protein (212aa)
id=2973108 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
id=4331123 Tax=GWC2_Rokubacteria_70_16_curated
13_1_40cm_3_scaffold_1880_17
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(20585..21394)
DNA (810bp) protein (270aa)
Type IV pilus biogenesis protein PilM id=2973111 bin=GWC2_Methylomirabilis_70_24 species=Plesiocystis pacifica genus=Plesiocystis taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
type IV pilus assembly protein PilM; K02662 type IV pilus assembly protein PilM Tax=GWA2_Rokubacteria_70_23_curated
13_1_40cm_3_scaffold_1880_18
Bacillus methanolicus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(21639..23477)
DNA (1839bp) protein (613aa)
hypothetical protein n=1 Tax=Paenibacillus daejeonensis RepID=UPI000372770B
yqgS; Lipoteichoic acid synthase-like YqgS
Lipoteichoic acid synthase-like YqgS {ECO:0000313|EMBL:AIE60728.1}; TaxID=796606 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus methanolicus MGA3.;"
13_1_40cm_3_scaffold_1880_19
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(23658..24095)
DNA (438bp) protein (146aa)
Type IV prepilin id=4424737 bin=GWC2_Methylomirabilis_70_16 species=Acinetobacter beijerinckii genus=Acinetobacter taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
methylation; K02650 type IV pilus assembly protein PilA Tax=GWC2_Rokubacteria_70_16_curated
Tfp pilus assembly protein, major pilin PilA
Displaying 19 items

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