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13_1_40cm_3_scaffold_191

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_191_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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2..583
DNA (582bp) protein (194aa)
riboflavin biosynthesis protein RibA (EC:3.5.4.25); K14652 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_cura
3,4-dihydroxy-2-butanone 4-phosphate synthase (EC:3.5.4.25)
Riboflavin biosynthesis protein RibBA id=4000102 bin=GWF2_Methylomirabilis_70_14 species=Thermacetogenium phaeum genus=Thermacetogenium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_3_scaffold_191_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

585..1217
DNA (633bp) protein (211aa)
6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9); K00794 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] Tax=GWA2_Rokubacteria_73_35_curated
6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9)
6,7-dimethyl-8-ribityllumazine synthase id=4041875 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_3_scaffold_191_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1219..1635
DNA (417bp) protein (139aa)
nusB; N utilization substance protein B Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
N utilization substance protein B homolog id=4041876 bin=GWA2_Methylomirabilis_73_35 species=Chthoniobacter flavus genus=Chthoniobacter taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
NusB antitermination factor
13_1_40cm_3_scaffold_191_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

1644..1814
DNA (171bp) protein (57aa)
Metallophosphoesterase id=4041877 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
phosphatase family protein Tax=GWA2_Rokubacteria_73_35_curated
metallophosphoesterase
13_1_40cm_3_scaffold_191_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1911..2318
DNA (408bp) protein (136aa)
phosphatase family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Metallophosphoesterase id=4041877 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Ser/Thr protein phosphatase family protein
13_1_40cm_3_scaffold_191_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2306..3823
DNA (1518bp) protein (506aa)
lnt-1; apolipoprotein N-acyltransferase; K03820 apolipoprotein N-acyltransferase [EC:2.3.1.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Apolipoprotein N-acyltransferase id=4041878 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
lnt-1; apolipoprotein N-acyltransferase
13_1_40cm_3_scaffold_191_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3938..4927
DNA (990bp) protein (330aa)
hypothetical protein; K02836 peptide chain release factor 2 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Peptide chain release factor 2 id=4041879 bin=GWA2_Methylomirabilis_73_35 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_3_scaffold_191_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4924..6450
DNA (1527bp) protein (509aa)
lysyl-tRNA synthetase (EC:6.1.1.6); K04567 lysyl-tRNA synthetase, class II [EC:6.1.1.6] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
lysyl-tRNA synthetase (EC:6.1.1.6)
Lysine--tRNA ligase id=4000090 bin=GWF2_Methylomirabilis_70_14 species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_3_scaffold_191_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6447..7679
DNA (1233bp) protein (411aa)
lolC; Lipoprotein releasing system, transmembrane protein, LolC/E family Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
lolC; Lipoprotein releasing system, transmembrane protein, LolC/E family id=14627199 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
lolC; Lipoprotein releasing system, transmembrane protein, LolC/E family
13_1_40cm_3_scaffold_191_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7672..8388
DNA (717bp) protein (239aa)
ABC transporter; K09810 lipoprotein-releasing system ATP-binding protein [EC:3.6.3.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC transporter related id=4000086 bin=GWF2_Methylomirabilis_70_14 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter
13_1_40cm_3_scaffold_191_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8534..10981
DNA (2448bp) protein (816aa)
ATPase AAA; K03696 ATP-dependent Clp protease ATP-binding subunit ClpC Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ATPase AAA; K03696 ATP-dependent Clp protease ATP-binding subunit ClpC id=14627196 bin=bin7_NC10_sister species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10 rbh
ATPase AAA
13_1_40cm_3_scaffold_191_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11011..13275
DNA (2265bp) protein (755aa)
Surface antigen (D15) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Outer membrane protein assembly factor BamA id=4879947 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
outer membrane protein
13_1_40cm_3_scaffold_191_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13285..13863
DNA (579bp) protein (193aa)
outer membrane chaperone Skp; K06142 outer membrane protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative Outer membrane chaperone Skp (OmpH) id=3956968 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
membrane protein
13_1_40cm_3_scaffold_191_14
unknown

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13863..13964
DNA (102bp) protein (34aa)

This feature has no annotations

13_1_40cm_3_scaffold_191_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13951..14808
DNA (858bp) protein (286aa)
acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase (EC:2.3.1.129); K00677 UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
lpxA; putative acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase (EC:2.3.1.129)
UDP-3-O-acylglucosamine N-acyltransferase id=3956967 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_3_scaffold_191_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

14808..15836
DNA (1029bp) protein (343aa)
Oxidoreductase domain protein id=3956964 bin=GWA2_Methylomirabilis_73_35 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
oxidoreductase Tax=GWA2_Rokubacteria_73_35_curated
oxidoreductase
13_1_40cm_3_scaffold_191_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

15815..16615
DNA (801bp) protein (267aa)
Putative uncharacterized protein id=3956961 bin=GWA2_Methylomirabilis_73_35 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_3_scaffold_191_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16564..17763
DNA (1200bp) protein (400aa)
lpxB; Lipid-A-disaccharide synthase (EC:2.4.1.182) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
lpxB; Lipid-A-disaccharide synthase (EC:2.4.1.182)
Lipid-A-disaccharide synthase id=3956956 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_3_scaffold_191_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17857..18513
DNA (657bp) protein (219aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein; K09778 hypothetical protein id=14627188 bin=bin7_NC10_sister species=Desulfococcus multivorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_3_scaffold_191_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

18513..19811
DNA (1299bp) protein (433aa)
kdtA; 3-deoxy-D-manno-octulosonic-acid transferase (EC:2.-.-.-) Tax=GWA2_Rokubacteria_73_35_curated
kdtA; 3-deoxy-D-manno-octulosonic-acid transferase (EC:2.-.-.-)
3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) id=3956951 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_3_scaffold_191_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

19808..20890
DNA (1083bp) protein (361aa)
lipid-A-disaccharide synthase (EC:2.4.1.182); K00912 tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] Tax=GWA2_Rokubacteria_73_35_curated
tetraacyldisaccharide 4'-kinase (EC:2.7.1.130)
Tetraacyldisaccharide 4'-kinase id=3956947 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_1_40cm_3_scaffold_191_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

20881..21879
DNA (999bp) protein (333aa)
ADP-heptose--LPS heptosyltransferase II (EC:2.-.-.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ADP-heptose--LPS heptosyltransferase II (EC:2.-.-.-)
ADP-heptose--LPS heptosyltransferase II (Modular protein) id=3956942 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_3_scaffold_191_23
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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21876..22994
DNA (1119bp) protein (373aa)
Glycosyl transferase group 1 id=3956940 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
group 1 glycosyl transferase Tax=GWA2_Rokubacteria_73_35_curated
group 1 glycosyl transferase
13_1_40cm_3_scaffold_191_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

23009..24019
DNA (1011bp) protein (337aa)
putative phosphatidylinositol alpha-mannosyltransferase (EC:2.4.1.57) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative Phosphatidylinositol alpha-mannosyltransferase id=3956937 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glycosyltransferase
Displaying 24 items

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