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13_1_40cm_3_scaffold_2205

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_2205_1
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(1..579)
DNA (579bp) protein (193aa)
moaA; molybdenum cofactor biosynthesis protein A; K03639 molybdenum cofactor biosynthesis protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Molybdenum cofactor biosynthesis protein A id=4765405 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
moaA; molybdenum cofactor biosynthesis protein A
13_1_40cm_3_scaffold_2205_2
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(569..1003)
DNA (435bp) protein (145aa)
molybdopterin biosynthesis MoaE protein; K03635 molybdopterin synthase catalytic subunit [EC:2.-.-.-] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Molybdopterin converting factor, large subunit n=1 Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6QE59_9FIRM
molybdopterin biosynthesis MoaE protein
13_1_40cm_3_scaffold_2205_3
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

Not on your lists

comp(1124..1372)
DNA (249bp) protein (83aa)
molybdopterin converting factor subunit 1; K03635 molybdopterin synthase catalytic subunit [EC:2.-.-.-] id=12556568 bin=CNBR_ACIDO species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
moaD; molybdopterin converting factor, subunit 1; K03636 molybdopterin synthase sulfur carrier subunit Tax=RBG_16_Acidobacteria_68_9_curated
molybdenum cofactor biosynthesis protein
13_1_40cm_3_scaffold_2205_4
Pontibacter korlensis, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(1379..3157)
DNA (1779bp) protein (593aa)
peptidase M61 n=1 Tax=Pontibacter roseus RepID=UPI00036CB6C9
peptidase M61
Peptidase M61 {ECO:0000313|EMBL:AKD05793.1}; TaxID=400092 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter korlensis.;"
13_1_40cm_3_scaffold_2205_5
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(3252..3566)
DNA (315bp) protein (105aa)
DNA-binding protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A906_GEMAT
DNA-binding protein; K05788 integration host factor subunit beta Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
histone family protein DNA-binding protein
13_1_40cm_3_scaffold_2205_6
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(3624..4598)
DNA (975bp) protein (325aa)
carA; carbamoyl-phosphate synthase small chain (EC:6.3.5.5); K01956 carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
carA; carbamoyl-phosphate synthase small chain (EC:6.3.5.5)
Carbamoyl-phosphate synthase small chain n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A907_GEMAT
13_1_40cm_3_scaffold_2205_7
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(4720..5103)
DNA (384bp) protein (128aa)
Protein-export membrane protein SecG n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A908_GEMAT
secG; protein-export membrane protein SecG; K03075 preprotein translocase subunit SecG Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
preprotein translocase, SecG subunit
13_1_40cm_3_scaffold_2205_8
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(5120..5869)
DNA (750bp) protein (250aa)
tpiA; triosephosphate isomerase (EC:5.3.1.1); K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Triosephosphate isomerase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A909_GEMAT
Triosephosphate isomerase, bacterial/eukaryotic
13_1_40cm_3_scaffold_2205_9
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(5866..7047)
DNA (1182bp) protein (394aa)
pgk; phosphoglycerate kinase (EC:2.7.2.3); K00927 phosphoglycerate kinase [EC:2.7.2.3] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Phosphoglycerate kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A910_GEMAT
Phosphoglycerate kinase
13_1_40cm_3_scaffold_2205_10
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(7044..8057)
DNA (1014bp) protein (338aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bact
Glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A911_GEMAT
glyceraldehyde-3-phosphate dehydrogenase, type I
13_1_40cm_3_scaffold_2205_11
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(8068..8532)
DNA (465bp) protein (155aa)
hypothetical protein n=1 Tax=Desulfurispora thermophila RepID=UPI0003795334
hypothetical protein
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_40cm_3_scaffold_2205_12
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(8783..9280)
DNA (498bp) protein (166aa)
Shikimate dehydrogenase (EC:1.1.1.25)
Shikimate dehydrogenase n=1 Tax=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) RepID=AROE_METRJ
aroE; shikimate 5-dehydrogenase Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_3_scaffold_2205_13
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(9538..10008)
DNA (471bp) protein (157aa)
protein-tyrosine-phosphatase (EC:3.1.3.48); K01104 protein-tyrosine phosphatase [EC:3.1.3.48] Tax=RBG_16_Gemmatimonadetes_66_8_curated
protein-tyrosine-phosphatase (EC:3.1.3.48)
Protein-tyrosine-phosphatase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A914_GEMAT
13_1_40cm_3_scaffold_2205_14
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(10005..10658)
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A915_GEMAT
hypothetical protein; K07566 tRNA threonylcarbamoyladenosine biosynthesis protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Sua5/YciO/YrdC/YwlC family protein
13_1_40cm_3_scaffold_2205_15
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(10655..11383)
DNA (729bp) protein (243aa)
ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC:2.7.7.60); K00991 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_
ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC:2.7.7.60)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A916_GEMAT
13_1_40cm_3_scaffold_2205_16
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(11355..12674)
DNA (1320bp) protein (440aa)
DNA repair protein radA n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A917_GEMAT
radA; DNA repair protein RadA; K04485 DNA repair protein RadA/Sms Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
DNA repair protein RadA
13_1_40cm_3_scaffold_2205_17
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(12667..14094)
DNA (1428bp) protein (476aa)
dnaB; replicative DNA helicase (EC:3.6.1.-); K02314 replicative DNA helicase [EC:3.6.4.12] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
dnaB; replicative DNA helicase (EC:3.6.1.-)
Replicative DNA helicase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A918_GEMAT
13_1_40cm_3_scaffold_2205_18
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(14057..14776)
DNA (720bp) protein (240aa)
putative DNA glycosylase; K02334 DNA polymerase bacteriophage-type [EC:2.7.7.7] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Putative DNA glycosylase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A919_GEMAT
phage SPO1 DNA polymerase-related protein
13_1_40cm_3_scaffold_2205_19
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(14937..16004)
DNA (1068bp) protein (356aa)
phosphopantothenoylcysteine decarboxylase; phosphopantothenate-cysteine ligase (EC:4.1.1.36 6.3.2.5); K13038 phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase [EC:4.1.1.
Peptidase ClpP n=1 Tax=Brevibacillus panacihumi W25 RepID=V6M4A9_9BACL
phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase
13_1_40cm_3_scaffold_2205_20
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(16004..16219)
DNA (216bp) protein (72aa)
Putative RNA polymerase omega subunit n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A920_GEMAT
rpoZ; putative RNA polymerase omega subunit Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
rpoZ; putative RNA polymerase omega subunit
13_1_40cm_3_scaffold_2205_21
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(16223..16885)
DNA (663bp) protein (221aa)
gmk; guanylate kinase (EC:2.7.4.8); K00942 guanylate kinase [EC:2.7.4.8] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
gmk; guanylate kinase (EC:2.7.4.8)
Guanylate kinase n=3 Tax=Clostridium perfringens RepID=B1BW94_CLOPF
13_1_40cm_3_scaffold_2205_22
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(16882..17748)
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A922_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Conserved hypothetical protein CHP00255
13_1_40cm_3_scaffold_2205_23
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(17745..19487)
DNA (1743bp) protein (581aa)
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
13_1_40cm_3_scaffold_2205_24
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(19484..20950)
DNA (1467bp) protein (489aa)
pepA; cytosol aminopeptidase (EC:3.4.11.1); K01255 leucyl aminopeptidase [EC:3.4.11.1] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
leucyl aminopeptidase (EC:3.4.11.1)
Probable cytosol aminopeptidase n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AWY8_RUBXD
13_1_40cm_3_scaffold_2205_25
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(20947..22146)
DNA (1200bp) protein (400aa)
icd; isocitrate dehydrogenase, nADP-dependent; K00031 isocitrate dehydrogenase [EC:1.1.1.42] Tax=RBG_16_Gemmatimonadetes_66_8_curated
icd; isocitrate dehydrogenase, nADP-dependent; K00031 isocitrate dehydrogenase [EC:1.1.1.42] id=14424435 bin=bin1_lowGC species=unknown genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=bin1_lowGC organism_group=Unknown_CP
isocitrate dehydrogenase, NADP-dependent
13_1_40cm_3_scaffold_2205_26
unknown

Not on your lists

22235..22486
DNA (252bp) protein (84aa)

This feature has no annotations

Displaying 26 items

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