ggKbase home page

13_1_40cm_3_scaffold_2935

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_2935_1
Nitrosococcus watsonii, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..489
DNA (489bp) protein (163aa)
Lipopolysaccharide biosynthesis protein n=1 Tax=Nitrosococcus watsoni (strain C-113) RepID=D8KBE3_NITWC
lipopolysaccharide biosynthesis protein
Lipopolysaccharide biosynthesis protein {ECO:0000313|EMBL:ADJ29590.1}; TaxID=105559 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitros
13_1_40cm_3_scaffold_2935_2
RBG_13_Ignavibacteria_36_8_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(529..1413)
DNA (885bp) protein (295aa)
MscS Mechanosensitive ion channel n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XSF5_9BACT rbh
mechanosensitive ion channel MscS Tax=RBG_13_Ignavibacteria_36_8_curated
AefA
13_1_40cm_3_scaffold_2935_3
unknown

Not on your lists

comp(1892..2002)
DNA (111bp) protein (37aa)

This feature has no annotations

13_1_40cm_3_scaffold_2935_4
unknown

Not on your lists

comp(2007..2174)
DNA (168bp) protein (56aa)

This feature has no annotations

13_1_40cm_3_scaffold_2935_5
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2485..3492
DNA (1008bp) protein (336aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component id=1951602 bin=GWD2_Deltaproteobacteria_55_8 species=Synechococcus sp. PCC 7502 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
hypothetical protein
13_1_40cm_3_scaffold_2935_6
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3513..3632
DNA (120bp) protein (40aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
13_1_40cm_3_scaffold_2935_7
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3830..4528
DNA (699bp) protein (233aa)
dihydrodipicolinate synthase n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD06CF
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
13_1_40cm_3_scaffold_2935_8
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4688..5077
DNA (390bp) protein (130aa)
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
13_1_40cm_3_scaffold_2935_9
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5148..5459)
DNA (312bp) protein (104aa)
Antibiotic biosynthesis monooxygenase n=1 Tax=Desulfovibrio sp. X2 RepID=S7VG53_9DELT
putative antibiotic biosynthesis monooxygenase Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
putative antibiotic biosynthesis monooxygenase
13_1_40cm_3_scaffold_2935_10
unknown

Not on your lists

comp(5482..5637)
DNA (156bp) protein (52aa)

This feature has no annotations

13_1_40cm_3_scaffold_2935_11
unknown

Not on your lists

comp(5664..5759)
DNA (96bp) protein (32aa)

This feature has no annotations

13_1_40cm_3_scaffold_2935_12
Spirochaeta smaragdinae, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

6006..6593
DNA (588bp) protein (196aa)
Rare lipoprotein A n=1 Tax=Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228) RepID=E1RBG7_SPISS
lipoprotein A
Rare lipoprotein A {ECO:0000313|EMBL:ADK79697.1}; Flags: Precursor;; TaxID=573413 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta smaragdinae (stra
13_1_40cm_3_scaffold_2935_13
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6771..8093)
DNA (1323bp) protein (441aa)
multi-sensor hybrid histidine kinase (EC:2.7.3.-) Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
GAF sensor signal transduction histidine kinase id=1737062 bin=GWD2_Deltaproteobacteria_55_8 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
signal transduction histidine kinase
13_1_40cm_3_scaffold_2935_14
unknown

Not on your lists

comp(8378..8764)
DNA (387bp) protein (129aa)

This feature has no annotations

13_1_40cm_3_scaffold_2935_15
RLO_Entotheonella_69_37, Entotheonella, Bacteria

Not on your lists

comp(9124..10167)
DNA (1044bp) protein (348aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like id=14631587 bin=bin9_gal15 species=Bacillus azotoformans genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin9_gal15 organism_group=GAL15
nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein
13_1_40cm_3_scaffold_2935_16
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10667..12340
DNA (1674bp) protein (558aa)
indole-3-pyruvate decarboxylase; K04103 indolepyruvate decarboxylase [EC:4.1.1.74] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
Thiamine pyrophosphate enzyme n=1 Tax=Chlorogloeopsis RepID=UPI0002E70338
indole-3-pyruvate decarboxylase
13_1_40cm_3_scaffold_2935_17
unknown

Not on your lists

comp(12331..12552)
DNA (222bp) protein (74aa)

This feature has no annotations

13_1_40cm_3_scaffold_2935_18
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12515..12814)
DNA (300bp) protein (100aa)
hypothetical protein
MtN3 and saliva related transmembrane protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
MtN3 and saliva related transmembrane protein id=5040448 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
13_1_40cm_3_scaffold_2935_19
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12968..13333)
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TFX4_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCE05362.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp.
hypothetical protein
13_1_40cm_3_scaffold_2935_20
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13712..15271)
DNA (1560bp) protein (520aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
Uncharacterized protein id=2082891 bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
13_1_40cm_3_scaffold_2935_21
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15438..16256)
DNA (819bp) protein (273aa)
zinc-binding oxidoreductase (EC:1.6.5.5)
Putative zinc-binding oxidoreductase {ECO:0000313|EMBL:CAN95805.1}; EC=1.6.5.5 {ECO:0000313|EMBL:CAN95805.1};; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorang
Putative zinc-binding oxidoreductase n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9G3W5_SORC5
Displaying 21 items

View Taxonomy