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13_1_40cm_3_scaffold_3143

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_3143_1
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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3..1721
DNA (1719bp) protein (573aa)
WGS project CABT00000000 data, contig 2.14 id=3824668 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
WGS project CABT00000000 data, contig 2.14 Tax=GWC2_Rokubacteria_70_16_curated
13_1_40cm_3_scaffold_3143_2
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(2031..3602)
DNA (1572bp) protein (524aa)
Exported protein id=3824568 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
hypothetical protein
13_1_40cm_3_scaffold_3143_3
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

3701..4012
DNA (312bp) protein (104aa)
id=3523877 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
id=3523877 Tax=GWA2_Rokubacteria_70_23_curated
13_1_40cm_3_scaffold_3143_4
R_NC10_66_22, NC10, Bacteria

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comp(4017..4631)
DNA (615bp) protein (205aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
Putative uncharacterized protein id=2971017 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_3_scaffold_3143_5
unknown

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4825..5004
DNA (180bp) protein (60aa)

This feature has no annotations

13_1_40cm_3_scaffold_3143_6
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

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5122..6447
DNA (1326bp) protein (442aa)
hypothetical protein; K02027 multiple sugar transport system substrate-binding protein Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
Putative uncharacterized protein id=2259308 bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sugar ABC transporter substrate-binding protein
13_1_40cm_3_scaffold_3143_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(6451..7290)
DNA (840bp) protein (280aa)
ABC-type tungstate transport system permease component-like protein id=2315320 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC-type tungstate transport system permease component-like protein Tax=GWA2_Rokubacteria_73_35_curated
ABC-type tungstate transport system permease component-like protein
13_1_40cm_3_scaffold_3143_8
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(7356..7787)
DNA (432bp) protein (144aa)
Putative transcriptional regulator, ModE family n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MEL3_9BACT
ModE family transcriptional regulator
Putative transcriptional regulator, ModE family {ECO:0000313|EMBL:CBE68190.1}; TaxID=671143 species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabil
13_1_40cm_3_scaffold_3143_9
unknown

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7900..8205
DNA (306bp) protein (102aa)

This feature has no annotations

13_1_40cm_3_scaffold_3143_10
unknown

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8321..8680
DNA (360bp) protein (120aa)

This feature has no annotations

13_1_40cm_3_scaffold_3143_11
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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8745..9488
DNA (744bp) protein (248aa)
Two-component response transcriptional regulator (OmpR family) n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MN98_9BACT
ompR; two-component response transcriptional regulator (OmpR family)
Two-component response transcriptional regulator (OmpR family) {ECO:0000313|EMBL:CBE70242.1}; TaxID=671143 species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus
13_1_40cm_3_scaffold_3143_12
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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9488..10897
DNA (1410bp) protein (470aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=671143 species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidat
Periplasmic sensor signal transduction histidine kinase n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MN99_9BACT
periplasmic sensor signal transduction histidine kinase
13_1_40cm_3_scaffold_3143_13
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

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10954..12126
DNA (1173bp) protein (391aa)
Multidrug efflux system, subunit A n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PIX7_9BACT
mdtA; multidrug efflux system subunit A
Multidrug efflux system, subunit A {ECO:0000313|EMBL:CBK43214.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
13_1_40cm_3_scaffold_3143_14
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

12123..12914
DNA (792bp) protein (264aa)
Multidrug efflux system, subunit B n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PIX6_9BACT
mdtB; multidrug efflux system subunit B
Multidrug efflux system, subunit B {ECO:0000313|EMBL:CBK43213.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
13_1_40cm_3_scaffold_3143_15
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

12854..15181
DNA (2328bp) protein (776aa)
Multidrug efflux system, subunit B n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PIX6_9BACT
mdtB; multidrug efflux system subunit B
Multidrug efflux system, subunit B {ECO:0000313|EMBL:CBK43213.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
13_1_40cm_3_scaffold_3143_16
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

15284..18217
DNA (2934bp) protein (978aa)
Multidrug efflux system, subunit C n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PIX5_9BACT
mdtC; multidrug efflux system subunit C
Multidrug efflux system, subunit C {ECO:0000313|EMBL:CBK43212.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
13_1_40cm_3_scaffold_3143_17
R_Betaproteobacteria_64_12, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18214..19680
DNA (1467bp) protein (489aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_64_12_curated
RND efflux system, outer membrane lipoprotein, NodT family id=3080102 bin=GWF2_Geobacter_54_21 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good rbh
RND efflux system outer membrane lipoprotein
13_1_40cm_3_scaffold_3143_18
unknown

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comp(19738..20589)
DNA (852bp) protein (284aa)

This feature has no annotations

13_1_40cm_3_scaffold_3143_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

20726..21403
DNA (678bp) protein (226aa)
PhoB family transcriptional regulator n=1 Tax=zeta proteobacterium SCGC AB-602-C20 RepID=UPI000377B06F
cztR; heavy metal response regulator; K07665 two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
transcriptional regulator
13_1_40cm_3_scaffold_3143_20
unknown

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21590..21715
DNA (126bp) protein (42aa)

This feature has no annotations

13_1_40cm_3_scaffold_3143_21
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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21699..22235
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X177_9BRAD
conserved exported protein of unknown function
Uncharacterized protein {ECO:0000313|EMBL:EAQ34012.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-31
13_1_40cm_3_scaffold_3143_22
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(22344..22547)
DNA (204bp) protein (68aa)
guanylate cyclase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Putative adenylate cyclase; with Tetratricopeptide TPR_4 motifs for protein-protein interaction id=4775525 bin=GWC2_Methylomirabilis_70_16 species=Cupriavidus taiwanensis genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
adenylate cyclase
Displaying 22 items

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