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13_1_40cm_3_scaffold_336

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_336_1
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

43..1515
DNA (1473bp) protein (491aa)
periplasmic serine protease (EC:3.4.21.-)
Uncharacterized protein n=1 Tax=Methanoculleus bourgensis (strain ATCC 43281 / DSM 3045 / OCM 15 / MS2) RepID=I7LNK0_METBM
peptidase S1 and S6 chymotrypsin/Hap Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
13_1_40cm_3_scaffold_336_2
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1845..3083
DNA (1239bp) protein (413aa)
Putative glycosyl transferase n=1 Tax=Oscillatoria sp. PCC 6506 RepID=D8FYW9_9CYAN
glycosyl transferase family protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
glycosyl transferase family 2
13_1_40cm_3_scaffold_336_3
Isosphaera pallida, Isosphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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3084..3719
DNA (636bp) protein (212aa)
Methyltransferase type 11 n=1 Tax=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) RepID=E8R3V2_ISOPI
type 11 methyltransferase
Methyltransferase type 11 {ECO:0000313|EMBL:ADV63682.1}; TaxID=575540 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Isosphaera.;" source="Isosphaera pallida (
13_1_40cm_3_scaffold_336_4
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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comp(3729..5411)
DNA (1683bp) protein (561aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI00037BC62D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ88400.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatu
13_1_40cm_3_scaffold_336_5
unknown

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5679..6503
DNA (825bp) protein (275aa)

This feature has no annotations

13_1_40cm_3_scaffold_336_6
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

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comp(6508..7746)
DNA (1239bp) protein (413aa)
Twitching motility protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ITV6_KORVE
twitching motility protein; K02669 twitching motility protein PilT Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
twitching motility protein
13_1_40cm_3_scaffold_336_7

Not on your lists

comp(7978..9540)
DNA (1563bp) protein (521aa)
Serine-type carboxypeptidase family protein (Fragment) n=2 Tax=mine drainage metagenome RepID=T1BW54_9ZZZZ
Serine-type carboxypeptidase family protein {ECO:0000313|EMBL:EQD58100.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage
carboxypeptidase C (cathepsin A)
13_1_40cm_3_scaffold_336_8
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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comp(9619..10278)
DNA (660bp) protein (220aa)
HAD-superfamily hydrolase subfamily IA, variant 3 n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IJM1_KORVE
HAD family hydrolase
HAD-superfamily hydrolase subfamily IA, variant 3 {ECO:0000313|EMBL:ABF42929.1}; Flags: Precursor;; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Korib
13_1_40cm_3_scaffold_336_9
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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11086..11454
DNA (369bp) protein (123aa)
Putative transcriptional regulator n=130 Tax=Pseudomonas RepID=TRPO_PSEAE
LuxR family transcriptional regulator
Probable two-component response regulator {ECO:0000313|EMBL:ABR83170.1}; TaxID=381754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="
13_1_40cm_3_scaffold_336_10
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11586..12083)
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI000360F581
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
putative tyrosine phosphatase
13_1_40cm_3_scaffold_336_trna_1
unknown

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comp(12182..12254)
DNA (73bp)
transferRNA
13_1_40cm_3_scaffold_336_11
RBG_16_Chloroflexi_54_18_curated, Chloroflexi, Bacteria

Not on your lists

12486..13574
DNA (1089bp) protein (363aa)
gmd; GDP-mannose 4,6-dehydratase (EC:4.2.1.47); K01711 GDPmannose 4,6-dehydratase [EC:4.2.1.47] Tax=RBG_16_Chloroflexi_54_18_curated
gmd; GDP-mannose 4,6-dehydratase (EC:4.2.1.47); K01711 GDPmannose 4,6-dehydratase [EC:4.2.1.47] id=24501441 bin=RBG_19FT_COMBO_GAL15_69_19 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
gmd; GDP-mannose 4,6-dehydratase (EC:4.2.1.47)
13_1_40cm_3_scaffold_336_12
RLO_PLX_64_10, Bacteria

Not on your lists

13587..14540
DNA (954bp) protein (318aa)
NAD-dependent epimerase/dehydratase; K02377 GDP-L-fucose synthase [EC:1.1.1.271] Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
NAD-dependent epimerase/dehydratase id=4972166 bin=GWA2_OP3_52_12 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
nucleoside-diphosphate-sugar epimerase
13_1_40cm_3_scaffold_336_13
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

14726..16396
DNA (1671bp) protein (557aa)
Putative signal transduction histidine kinase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IT24_KORVE
signal transduction histidine kinase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
signal transduction histidine kinase
13_1_40cm_3_scaffold_336_14
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

16472..17140
DNA (669bp) protein (223aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q027R2_SOLUE
LuxR family transcriptional regulator Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
LuxR family transcriptional regulator
13_1_40cm_3_scaffold_336_15
unknown

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17569..17676
DNA (108bp) protein (36aa)

This feature has no annotations

13_1_40cm_3_scaffold_336_16
Granulicella mallensis, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

17753..19384
DNA (1632bp) protein (544aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI00036430AE
Peptidase S53 propeptide
Peptidase S53 propeptide {ECO:0000313|EMBL:AEU36249.1}; TaxID=682795 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicella mallensis (strain ATCC
13_1_40cm_3_scaffold_336_17
Granulicella tundricola, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

19459..21123
DNA (1665bp) protein (555aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI00036430AE
peptidase S53
Peptidase S53 propeptide {ECO:0000313|EMBL:ADW67262.1}; TaxID=1198114 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicella tundricola (strain ATC
13_1_40cm_3_scaffold_336_18
unknown

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comp(21056..21343)
DNA (288bp) protein (96aa)

This feature has no annotations

13_1_40cm_3_scaffold_336_19
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

21711..21965
DNA (255bp) protein (85aa)
Putative protease {ECO:0000313|EMBL:ACO32160.1}; TaxID=240015 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium capsulatum (strain ATCC 51
13_1_40cm_3_scaffold_336_20
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

22176..25235
DNA (3060bp) protein (1020aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IU99_KORVE
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
hypothetical protein
13_1_40cm_3_scaffold_336_21
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

25363..26178
DNA (816bp) protein (272aa)
Flagelliform silk protein (Fragment) n=1 Tax=Nephila clavipes RepID=Q9NHW3_NEPCL
DNA polymerase III, subunit gamma/tau
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
Displaying 22 items

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