ggKbase home page

13_1_40cm_3_scaffold_3468

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_3468_1
unknown

Not on your lists

3..86
DNA (84bp) protein (28aa)

This feature has no annotations

13_1_40cm_3_scaffold_3468_2
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(250..1581)
DNA (1332bp) protein (444aa)
ISPpu20 transposase n=1 Tax=Pseudomonas putida RepID=F1LIY0_PSEPU
Transposase {ECO:0000313|EMBL:KIL02608.1}; TaxID=316 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (Pseudomonas
putative transposase
13_1_40cm_3_scaffold_3468_3
Defluviimonas sp. 20V17, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1700..2029)
DNA (330bp) protein (110aa)
Integrase n=2 Tax=Pandoraea RepID=V5UBN0_9BURK
Uncharacterized protein {ECO:0000313|EMBL:KDB03977.1}; TaxID=1417296 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Defluviimonas.;" source="Defluviimonas s
integrase
13_1_40cm_3_scaffold_3468_4
Calothrix sp. PCC 7507, Calothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(2410..2763)
DNA (354bp) protein (118aa)
mRNA interferase {ECO:0000256|PIRNR:PIRNR033490}; EC=3.1.-.- {ECO:0000256|PIRNR:PIRNR033490};; TaxID=99598 species="Bacteria; Cyanobacteria; Nostocales; Rivulariaceae; Calothrix.;" source="Calothrix s
mRNA interferase n=1 Tax=Calothrix sp. PCC 7507 RepID=K9PJ76_9CYAN
transcriptional modulator of MazE/toxin MazF
13_1_40cm_3_scaffold_3468_5
Scytonema tolypothrichoides, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(2738..3022)
DNA (285bp) protein (95aa)
hypothetical protein n=1 Tax=Anabaena sp. PCC 7108 RepID=UPI0003658CCD
Transcriptional regulator with CopG/Arc/MetJ DNA-binding domain and metal-binding domain protein {ECO:0000313|EMBL:KIJ80462.1}; TaxID=1233231 species="Bacteria; Cyanobacteria; Nostocales; Scytonematac
hypothetical protein
13_1_40cm_3_scaffold_3468_6
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

3125..3757
DNA (633bp) protein (211aa)
Phosphatase kdsC n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IK31_KORVE
phosphatase kdsC
Phosphatase kdsC {ECO:0000313|EMBL:ABF42769.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin
13_1_40cm_3_scaffold_3468_7
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(4132..4941)
DNA (810bp) protein (270aa)
Tetratricopeptide repeat protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IK32_KORVE
hypothetical protein
Tetratricopeptide repeat protein {ECO:0000313|EMBL:ABF42768.1}; Flags: Precursor;; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="
13_1_40cm_3_scaffold_3468_8
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(5012..7582)
DNA (2571bp) protein (857aa)
Penicillin-binding protein 1A {ECO:0000313|EMBL:ABF40068.1}; EC=2.4.1.129 {ECO:0000313|EMBL:ABF40068.1};; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus
Penicillin-binding protein 1A n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IST2_KORVE rbh
penicillin-binding protein 1A rbh
13_1_40cm_3_scaffold_3468_9
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(7809..8165)
DNA (357bp) protein (119aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IST3_KORVE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF40067.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strai
13_1_40cm_3_scaffold_3468_10
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists


comp(8192..9397)
DNA (1206bp) protein (402aa)
Proline--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_01569}; EC=6.1.1.15 {ECO:0000255|HAMAP-Rule:MF_01569};; Prolyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_01569}; Short=ProRS {ECO:0000255|HAMAP-Rule:MF
Proline--tRNA ligase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=SYP_KORVE
prolyl-tRNA synthetase
13_1_40cm_3_scaffold_3468_11
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(9420..9920)
DNA (501bp) protein (167aa)
Proline--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_01569}; EC=6.1.1.15 {ECO:0000255|HAMAP-Rule:MF_01569};; Prolyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_01569}; Short=ProRS {ECO:0000255|HAMAP-Rule:MF
Proline--tRNA ligase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=SYP_KORVE
prolyl-tRNA synthetase
13_1_40cm_3_scaffold_3468_12
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(10193..10402)
DNA (210bp) protein (70aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IST6_KORVE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF40064.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strai
13_1_40cm_3_scaffold_3468_13
GWC2_Nitrospirae_57_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(10466..10822)
DNA (357bp) protein (119aa)
Putative uncharacterized protein id=4262977 bin=GWC2_Nitrospirae_57_13 species=Oscillatoria nigro-viridis genus=Oscillatoria taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
CHP02436-containing protein Tax=GWC2_Nitrospirae_57_13_curated
hypothetical protein
13_1_40cm_3_scaffold_3468_14
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(10845..11915)
DNA (1071bp) protein (357aa)
KpsF/GutQ family protein {ECO:0000313|EMBL:ABF40061.1}; EC=5.3.1.13 {ECO:0000313|EMBL:ABF40061.1};; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Korib
KpsF/GutQ family protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IST9_KORVE
KpsF/GutQ family protein
13_1_40cm_3_scaffold_3468_15
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12039..13181)
DNA (1143bp) protein (381aa)
Uncharacterized protein n=2 Tax=Geobacter metallireducens RepID=Q39PY1_GEOMG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB33693.1}; TaxID=269799 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallire
13_1_40cm_3_scaffold_3468_16
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(13246..14016)
DNA (771bp) protein (257aa)
2-dehydro-3-deoxyphosphooctonate aldolase {ECO:0000255|HAMAP-Rule:MF_00056}; EC=2.5.1.55 {ECO:0000255|HAMAP-Rule:MF_00056};; 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase {ECO:0000255|HAMAP-Ru
2-dehydro-3-deoxyphosphooctonate aldolase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=KDSA_KORVE
2-dehydro-3-deoxyphosphooctonate aldolase
13_1_40cm_3_scaffold_3468_17
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(14186..15859)
DNA (1674bp) protein (558aa)
CTP synthase {ECO:0000255|HAMAP-Rule:MF_01227}; EC=6.3.4.2 {ECO:0000255|HAMAP-Rule:MF_01227};; CTP synthetase {ECO:0000255|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000255|HAMAP-Rule:MF_01227};
CTP synthase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=PYRG_KORVE rbh
pyrG; CTP synthetase
13_1_40cm_3_scaffold_3468_18
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

16269..16520
DNA (252bp) protein (84aa)
hypothetical protein n=1 Tax=Scytonema hofmanni RepID=UPI00034AC55B
AbrB family transcriptional regulator {ECO:0000313|EMBL:KIJ77732.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB5
AbrB family transcriptional regulator
13_1_40cm_3_scaffold_3468_19
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

16513..16899
DNA (387bp) protein (129aa)
PilT protein-like protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IHH8_KORVE
twitching motility protein PilT
PilT protein-like protein {ECO:0000313|EMBL:ABF43672.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (str
13_1_40cm_3_scaffold_3468_20
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

16910..17974
DNA (1065bp) protein (355aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IKE1_KORVE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF42659.1}; Flags: Precursor;; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacte
13_1_40cm_3_scaffold_3468_21
unknown

Not on your lists

18199..18753
DNA (555bp) protein (185aa)

This feature has no annotations

13_1_40cm_3_scaffold_3468_22
RBG_13_Deltaproteobacteria_43_22_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18717..19643)
DNA (927bp) protein (309aa)
Putative aromatic amino acid decarboxylase n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I796_CALAS
putative aromatic amino acid decarboxylase Tax=RBG_13_Deltaproteobacteria_43_22_curated
putative aromatic amino acid decarboxylase
Displaying 22 items

View Taxonomy