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13_1_40cm_3_scaffold_3482

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_3482_1
BJP_IG2102_Methanoregula_52_95, Methanoregula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

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comp(2..814)
DNA (813bp) protein (271aa)
rnhC; ribonuclease HIII (fragment) (EC:3.1.26.4); K03471 ribonuclease HIII [EC:3.1.26.4] Tax=BJP_IG2102_Methanoregula_52_95
rnhB; ribonuclease HIII (EC:3.1.26.4)
Ribonuclease id=3210310 bin=GWF2_Lentisphaerae_49_21 species=Chthoniobacter flavus genus=Chthoniobacter taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
13_1_40cm_3_scaffold_3482_2
Saccharothrix sp. ST-888, Saccharothrix, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

844..1929
DNA (1086bp) protein (362aa)
Pyruvate dehydrogenase E1 component alpha subunit (EC:1.2.4.1)
pyruvate dehydrogenase E1 subunit alpha n=1 Tax=Nocardiopsis ganjiahuensis RepID=UPI00034BA15F rbh
Pyruvate dehydrogenase {ECO:0000313|EMBL:KJK56798.1}; TaxID=1427391 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharothrix.;" source="Saccharothrix sp. ST-888.;"
13_1_40cm_3_scaffold_3482_3
Mycobacterium abscessus, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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1929..2897
DNA (969bp) protein (323aa)
2-oxoisovalerate dehydrogenase subunit beta n=1 Tax=Streptomyces vitaminophilus RepID=UPI00035C7FC9 rbh
Pyruvate dehydrogenase E1 component subunit beta {ECO:0000313|EMBL:EIC66464.1}; TaxID=1158135 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium absce
2-oxoisovalerate dehydrogenase
13_1_40cm_3_scaffold_3482_4
Streptomyces leeuwenhoekii, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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2890..4092
DNA (1203bp) protein (401aa)
branched-chain alpha-keto acid dehydrogenase subunit E2 n=1 Tax=Saccharopolyspora spinosa RepID=UPI0002378CFE
Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex {ECO:0000313|EMBL:CQR64038.1}; TaxID=1437453 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycet
branched-chain alpha-keto acid dehydrogenase subunit E2
13_1_40cm_3_scaffold_3482_5
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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4085..5326
DNA (1242bp) protein (414aa)
Isopropylmalate/homocitrate/citramalate synthase {ECO:0000313|EMBL:CDM66977.1}; EC=2.3.3.13 {ECO:0000313|EMBL:CDM66977.1};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4;
2-isopropylmalate synthase (EC:2.3.3.13)
2-isopropylmalate synthase n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FMN1_SORC5 id=5224560 bin=16ft_combo_ws3_JS1 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
13_1_40cm_3_scaffold_3482_6
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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comp(5532..6653)
DNA (1122bp) protein (374aa)
putative methionine synthase, vitamin-B12 independent (EC:2.1.1.14); K00549 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_
Methionine synthase vitamin-B12 independent n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C8T5_SPHTD
methionine synthase vitamin-B12 independent
13_1_40cm_3_scaffold_3482_7
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

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6864..7817
DNA (954bp) protein (318aa)
histidine kinase Tax=RBG_16_Chloroflexi_63_12_curated
13_1_40cm_3_scaffold_3482_8
Carboxydothermus hydrogenoformans, Carboxydothermus, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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7849..8514
DNA (666bp) protein (222aa)
HDIG domain protein n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=Q3AFQ2_CARHZ
HDIG domain-containing protein
HDIG domain protein {ECO:0000313|EMBL:ABB14883.1}; TaxID=246194 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Carboxydothermus.;" source="Carboxydothermus
13_1_40cm_3_scaffold_3482_9
unknown

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8511..8720
DNA (210bp) protein (70aa)

This feature has no annotations

13_1_40cm_3_scaffold_3482_10
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

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comp(8721..9479)
DNA (759bp) protein (253aa)
leuC; 3-isopropylmalate dehydratase large subunit (EC:4.2.1.33); K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_2
leuC; 3-isopropylmalate dehydratase large subunit (EC:4.2.1.33); K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] id=24577507 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Aquifex aeolicus genus=Aquifex taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
3-isopropylmalate dehydratase large subunit (EC:4.2.1.33)
13_1_40cm_3_scaffold_3482_11
Myxococcus xanthus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10680..11036)
DNA (357bp) protein (119aa)
Putative 3-isopropylmalate dehydrogenase n=2 Tax=Myxococcus xanthus RepID=Q1DCT3_MYXXD
3-isopropylmalate dehydrogenase
Putative 3-isopropylmalate dehydrogenase {ECO:0000313|EMBL:ABF89148.1}; TaxID=246197 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;
13_1_40cm_3_scaffold_3482_12
R_NC10_66_22, NC10, Bacteria

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comp(11014..11718)
DNA (705bp) protein (235aa)
3-isopropylmalate dehydrogenase 2; K00052 3-isopropylmalate dehydrogenase [EC:1.1.1.85] Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
3-isopropylmalate dehydrogenase n=1 Tax=Pyrococcus abyssi (strain GE5 / Orsay) RepID=Q9UZ05_PYRAB
leuB-1; 3-isopropylmalate dehydrogenase
13_1_40cm_3_scaffold_3482_13
unknown

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11783..11947
DNA (165bp) protein (55aa)

This feature has no annotations

13_1_40cm_3_scaffold_3482_14

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comp(11944..12588)
DNA (645bp) protein (215aa)
Anthranilate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083107}; EC=2.4.2.18 {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083113};; TaxID=77133 spec
trpD; anthranilate phosphoribosyltransferase (EC:2.4.2.18)
Anthranilate phosphoribosyltransferase n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=TRPD_CARHZ
13_1_40cm_3_scaffold_3482_15
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(12914..13681)
DNA (768bp) protein (256aa)
Peptidase M55 D-aminopeptidase n=1 Tax=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) RepID=A8F3T8_THELT
D-aminopeptidase; K02035 peptide/nickel transport system substrate-binding protein Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
peptidase M55 D-aminopeptidase
13_1_40cm_3_scaffold_3482_16
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists

comp(13988..14980)
DNA (993bp) protein (331aa)
transketolase; K00167 2-oxoisovalerate dehydrogenase E1 component, beta subunit [EC:1.2.4.4] Tax=GWC2_RIF_CHLX_73_18_curated
2-oxoisovalerate dehydrogenase beta subunit id=4899348 bin=GWC2_Chloroflexi_73_18 species=Sulfobacillus acidophilus genus=Sulfobacillus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component, eukaryotic type, beta subunit
13_1_40cm_3_scaffold_3482_17
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(14967..15950)
DNA (984bp) protein (328aa)
3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) (EC:1.2.4.4)
3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) {ECO:0000313|EMBL:ACZ40876.1}; EC=1.2.4.4 {ECO:0000313|EMBL:ACZ40876.1};; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobac
3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1CAN3_SPHTD
13_1_40cm_3_scaffold_3482_18
RBG_16_RIF_CHLX_69_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(15980..16540)
DNA (561bp) protein (187aa)
O-methyltransferase family 3 n=1 Tax=Marinithermus hydrothermalis (strain DSM 14884 / JCM 11576 / T1) RepID=F2NQR8_MARHT
O-methyltransferase Tax=RBG_16_RIF_CHLX_69_14_curated
O-methyltransferase
13_1_40cm_3_scaffold_3482_19
Thermomicrobium roseum, Thermomicrobium, Thermomicrobiales, Thermomicrobia, Chloroflexi, Bacteria

Not on your lists

comp(16599..17408)
DNA (810bp) protein (270aa)
thiD; phosphomethylpyrimidine kinase (EC:2.7.4.7)
Phosphomethylpyrimidine kinase {ECO:0000313|EMBL:ACM05096.1}; EC=2.7.4.7 {ECO:0000313|EMBL:ACM05096.1};; TaxID=309801 species="Bacteria; Chloroflexi; Thermomicrobiales; Thermomicrobiaceae; Thermomicro
Phosphomethylpyrimidine kinase n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9KY55_THERP
13_1_40cm_3_scaffold_3482_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17405..18790)
DNA (1386bp) protein (462aa)
Permease for cytosine/purines, uracil, thiamine, allantoin n=2 Tax=Sulfobacillus acidophilus RepID=F8I979_SULAT
cytosine/purines uracil thiamine allantoin permease
Uncharacterized protein {ECO:0000313|EMBL:AEW06333.1}; TaxID=679936 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfob
13_1_40cm_3_scaffold_3482_21
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

Not on your lists

comp(18888..19490)
DNA (603bp) protein (201aa)
Oxidoreductase molybdopterin binding n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TM56_9CHLR
molybdopterin binding oxidoreductase; K07147 Tax=RBG_16_RIF_CHLX_70_13_curated
molybdopterin binding oxidoreductase
13_1_40cm_3_scaffold_3482_22
unknown

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comp(19490..19735)
DNA (246bp) protein (82aa)

This feature has no annotations

13_1_40cm_3_scaffold_3482_23
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

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19759..20628
DNA (870bp) protein (290aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
hypothetical protein id=14628732 bin=bin8_Chloro species=Bacteriovorax marinus genus=Bacteriovorax taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin8_Chloro organism_group=Chloroflexi
13_1_40cm_3_scaffold_3482_24
unknown

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20782..20937
DNA (156bp) protein (52aa)

This feature has no annotations

Displaying 24 items

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