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13_1_40cm_3_scaffold_473

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_473_1
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

2..265
DNA (264bp) protein (88aa)
Thiamine pyrophosphate enzyme id=2783151 bin=GWF2_Methylomirabilis_70_14 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
thiamine pyrophosphate enzyme; K06890 Tax=GWA2_Rokubacteria_70_23_curated
hypothetical protein
13_1_40cm_3_scaffold_473_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

277..1218
DNA (942bp) protein (314aa)
putative oxidoreductase Tax=GWA2_Rokubacteria_73_35_curated
putative F420-dependent oxidoreductase id=14626112 bin=bin7_NC10_sister species=Actinomadura madurae genus=Actinomadura taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
luciferase
13_1_40cm_3_scaffold_473_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(1206..2201)
DNA (996bp) protein (332aa)
threonine dehydratase (EC:4.3.1.19); K01754 threonine dehydratase [EC:4.3.1.19] id=14626116 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
threonine dehydratase (EC:4.3.1.19); K01754 threonine dehydratase [EC:4.3.1.19] Tax=GWA2_Rokubacteria_73_35_curated
pyridoxal-5'-phosphate-dependent enzyme subunit beta
13_1_40cm_3_scaffold_473_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2262..3224
DNA (963bp) protein (321aa)
putative signal peptide peptidase SppA (EC:3.4.21.-); K04773 protease IV [EC:3.4.21.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
putative signal peptide peptidase SppA (EC:3.4.21.-)
Putative Signal peptide peptidase SppA id=3526411 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
13_1_40cm_3_scaffold_473_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3415..4008)
DNA (594bp) protein (198aa)
Coenzyme A pyrophosphatase id=1890929 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
coenzyme A pyrophosphatase Tax=GWA2_Rokubacteria_73_35_curated
DNA mismatch repair protein MutT
13_1_40cm_3_scaffold_473_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4036..4842)
DNA (807bp) protein (269aa)
abortive infection protein; K07052 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Abortive infection protein id=1890947 bin=GWA2_Methylomirabilis_73_35 species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
abortive infection protein
13_1_40cm_3_scaffold_473_7
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(4843..5160)
DNA (318bp) protein (106aa)
amidase; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] Tax=GWC2_Rokubacteria_70_16_curated
Amidase id=3014927 bin=GWC2_Methylomirabilis_70_16 species=Rhodopseudomonas palustris genus=Rhodopseudomonas taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
amidase
13_1_40cm_3_scaffold_473_8
unknown

Not on your lists

comp(5344..5496)
DNA (153bp) protein (51aa)

This feature has no annotations

13_1_40cm_3_scaffold_473_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(5531..6361)
DNA (831bp) protein (277aa)
rluD_3; ribosomal large subunit pseudouridine synthase D; K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
RNA pseudouridylate synthase id=1890952 bin=GWA2_Methylomirabilis_73_35 species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
pseudouridine synthase
13_1_40cm_3_scaffold_473_10
unknown

Not on your lists

6522..6722
DNA (201bp) protein (67aa)

This feature has no annotations

13_1_40cm_3_scaffold_473_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

6790..7206
DNA (417bp) protein (139aa)
Two component, sigma54 specific, transcriptional regulator, Fis family id=4020045 bin=GWA2_Methylomirabilis_73_35 species=Streptomyces himastatinicus genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Fis family transcriptional regulator Tax=GWA2_Rokubacteria_73_35_curated
chemotaxis protein CheY
13_1_40cm_3_scaffold_473_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

7363..9744
DNA (2382bp) protein (794aa)
putative penicillin-binding protein 1B (EC:2.4.1.129 3.4.-.-); K05365 penicillin-binding protein 1B [EC:2.4.1.129 3.4.-.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Penicillin-binding protein, 1A family id=3640482 bin=GWC2_Proteo_65_14_Ab886 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
1A family penicillin-binding protein
13_1_40cm_3_scaffold_473_13
unknown

Not on your lists

9950..10222
DNA (273bp) protein (91aa)

This feature has no annotations

13_1_40cm_3_scaffold_473_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

10219..10440
DNA (222bp) protein (74aa)
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
13_1_40cm_3_scaffold_473_15
CSP1_5_NC10, NC10, Bacteria

Not on your lists

10437..11918
DNA (1482bp) protein (494aa)
acetoacetate metabolism regulatory protein AtoC n=1 Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI00036C7B55
response regulator in two-component regulatory system, sigma 54-dependent Tax=CSP1_5_NC10
response regulator in two-component regulatory system, sigma 54-dependent
13_1_40cm_3_scaffold_473_16
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

11928..13745
DNA (1818bp) protein (606aa)
Multi-sensor signal transduction histidine kinase (EC:2.7.3.-)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=671143 species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidat
hypothetical protein n=1 Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI00037CDC52 rbh
13_1_40cm_3_scaffold_473_17
unknown

Not on your lists

14367..14747
DNA (381bp) protein (127aa)

This feature has no annotations

13_1_40cm_3_scaffold_473_18
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

14805..16016
DNA (1212bp) protein (404aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI00030E032F
ABC transporter substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein Tax=GWA2_Rokubacteria_70_23_curated
ABC transporter substrate-binding protein
13_1_40cm_3_scaffold_473_19
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

16036..16731
DNA (696bp) protein (232aa)
coxL; carbon monoxide dehydrogenase (EC:1.2.99.2) Tax=GWA2_Rokubacteria_70_23_curated
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI0003670E63
coxL1; carbon-monoxide dehydrogenase large subunit
13_1_40cm_3_scaffold_473_20
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16709..17887
DNA (1179bp) protein (393aa)
coxL; carbon monoxide dehydrogenase (EC:1.2.99.2)
Carbon monoxide dehydrogenase large chain n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6ISQ8_RHOCS
coxL1; carbon-monoxide dehydrogenase large subunit Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
Displaying 20 items

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