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13_1_40cm_3_scaffold_5404

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_5404_1
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(162..1499)
DNA (1338bp) protein (446aa)
primary replicative DNA helicase; K02314 replicative DNA helicase [EC:3.6.4.12] Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
replicative DNA helicase; K02314 replicative DNA helicase [EC:3.6.4.12] id=12555611 bin=CNBR_ACIDO species=Desulfurivibrio alkaliphilus genus=Desulfurivibrio taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
primary replicative DNA helicase (EC:3.6.1.-)
13_1_40cm_3_scaffold_5404_2
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists


comp(2196..2648)
DNA (453bp) protein (151aa)
50S ribosomal protein L9 n=1 Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B51FA2
rplI; 50S ribosomal protein L9; K02939 large subunit ribosomal protein L9 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
rplI; 50S ribosomal protein L9
13_1_40cm_3_scaffold_5404_3
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists


comp(2676..2936)
DNA (261bp) protein (87aa)
30S ribosomal protein S18 n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=RS18_SOLUE
rpsR; 30S ribosomal protein S18
30S ribosomal protein S18 {ECO:0000255|HAMAP-Rule:MF_00270}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter u
13_1_40cm_3_scaffold_5404_4
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists


comp(2933..3277)
DNA (345bp) protein (115aa)
30S ribosomal protein S6 n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=RS6_ACIC5
rpsF; 30S ribosomal protein S6; K02990 small subunit ribosomal protein S6 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
rpsF; 30S ribosomal protein S6
13_1_40cm_3_scaffold_5404_5
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3278..3865)
DNA (588bp) protein (196aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBa
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AT85_9CLOT
13_1_40cm_3_scaffold_5404_6
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists


comp(3889..4569)
DNA (681bp) protein (227aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00035F6BE4
50S ribosomal protein L25P; K02897 large subunit ribosomal protein L25 Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
50S ribosomal protein L25
13_1_40cm_3_scaffold_5404_7
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(4658..5599)
DNA (942bp) protein (314aa)
ribose-phosphate pyrophosphokinase; K00948 ribose-phosphate pyrophosphokinase [EC:2.7.6.1] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase n=1 Tax=Acidobacterium sp. (strain MP5ACTX9) RepID=E8WWR3_ACISM
13_1_40cm_3_scaffold_5404_trna_1
unknown

Not on your lists

comp(5624..5695)
DNA (72bp)
transferRNA
13_1_40cm_3_scaffold_5404_8
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(5722..6579)
DNA (858bp) protein (286aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000255|HAMAP-Rule:MF_00061}; Short=CMK {ECO:0000255|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000255|HAMAP-Rule:MF_00061};; 4-(cytidine-5'-dipho
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=ISPE_SOLUE
13_1_40cm_3_scaffold_5404_9
R_Elusimicrobia_54_10, Elusimicrobia, Bacteria

Not on your lists

comp(6551..7204)
DNA (654bp) protein (218aa)
hypothetical protein n=1 Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI000377C205
methyltransferase type 11 Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_curated
methyltransferase
13_1_40cm_3_scaffold_5404_10
GWB1_OP11_41_10, Woesebacteria, Microgenomates, Bacteria

Not on your lists

7320..9002
DNA (1683bp) protein (561aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR85987.1}; TaxID=1618577 species="Bacteria; Microgenomates.;" source="Microgenomates (Woesebacteria) bacterium GW2011_GWB1_41_10.;"
Tetratricopeptide TPR_2 repeat protein id=1824442 bin=GWD2_Bacteroidetes_40_43 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
Tfp pilus assembly protein PilF
13_1_40cm_3_scaffold_5404_11
CG_Anaero_02, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

9055..9531
DNA (477bp) protein (159aa)
glycosyl transferase family protein Tax=CG_Anaero_02
glycosyl transferase id=4741175 bin=GWA2_Methylomirabilis_73_35 species=Oscillatoriales cyanobacterium JSC-12 genus=unknown taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glycosyl transferase family protein
13_1_40cm_3_scaffold_5404_12
unknown

Not on your lists

comp(9534..9779)
DNA (246bp) protein (82aa)

This feature has no annotations

13_1_40cm_3_scaffold_5404_13
RHI_OP11_Roizmanbacteria_36_11, Roizmannbacteria, Microgenomates, Bacteria

Not on your lists

9920..11416
DNA (1497bp) protein (499aa)
hypothetical protein n=1 Tax=Oscillatoria sp. PCC 10802 RepID=UPI00035F1565
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_OP11_Roizmanbacteria_36_11_curated
hypothetical protein
13_1_40cm_3_scaffold_5404_14
RIFOXYA2_FULL_Elusimicrobia_47_53_curated, Elusimicrobia, Bacteria

Not on your lists

11400..13028
DNA (1629bp) protein (543aa)
hypothetical protein Tax=RIFOXYA2_FULL_Elusimicrobia_47_53_curated
id=3009849 bin=GWC2_Geobacteraceae_55_20 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
hypothetical protein
13_1_40cm_3_scaffold_5404_15
RBG_13_Deltaproteobacteria_61_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13007..13711)
DNA (705bp) protein (235aa)
radical SAM domain-containing protein Tax=RBG_13_Deltaproteobacteria_61_14_curated
Radical SAM domain protein id=4540917 bin=GWC2_Planctomycete_KSU_39_26 species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Planctomycete_KSU_39_26 organism_group=Planctomycetes
radical SAM domain-containing protein
13_1_40cm_3_scaffold_5404_16
RLO_Nitrospinae_45_22, Nitrospinae, Bacteria

Not on your lists

comp(13719..14378)
DNA (660bp) protein (220aa)
hypothetical protein n=1 Tax=Nitrospina sp. SCGC AAA288-L16 RepID=UPI000376C187
radical SAM domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Nitrospinae_45_22_curated
radical SAM protein
13_1_40cm_3_scaffold_5404_17
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14475..15413)
DNA (939bp) protein (313aa)
Uncharacterized protein n=1 Tax=Cyanothece sp. (strain PCC 8802) RepID=C7QX18_CYAP0
Uncharacterized protein {ECO:0000313|EMBL:ETX06405.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
hypothetical protein
13_1_40cm_3_scaffold_5404_18
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(15420..16919)
DNA (1500bp) protein (500aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PIM6_9BACT rbh
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
hypothetical protein
13_1_40cm_3_scaffold_5404_19
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(16931..18943)
DNA (2013bp) protein (671aa)
putative methyltransferase and glycosyltransferase (EC:2.-.-.-)
Putative Methyltransferase and glycosyltransferase (Modular protein) {ECO:0000313|EMBL:CBK43116.1}; EC=2.-.-.- {ECO:0000313|EMBL:CBK43116.1};; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirale
Putative Methyltransferase and glycosyltransferase (Modular protein) n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PIM9_9BACT
Displaying 20 items

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