ggKbase home page

13_1_40cm_3_scaffold_6539

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_6539_1
unknown

Not on your lists

2..133
DNA (132bp) protein (44aa)

This feature has no annotations

13_1_40cm_3_scaffold_6539_2
Ilumatobacter coccineus, Ilumatobacter, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

1051..2427
DNA (1377bp) protein (459aa)
Uncharacterized protein n=1 Tax=Ilumatobacter coccineus YM16-304 RepID=M4ZZD1_9ACTN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN01609.1}; TaxID=1313172 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Ilumatobacter.;" source="Ilumatobacter cocc
13_1_40cm_3_scaffold_6539_3
Burkholderia sp. H160, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2496..3890
DNA (1395bp) protein (465aa)
Major facilitator superfamily MFS_1 n=1 Tax=Burkholderia sp. H160 RepID=B5WPW3_9BURK
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:EDZ99571.1}; TaxID=516466 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkho
general substrate transporter
13_1_40cm_3_scaffold_6539_4
unknown

Not on your lists

3946..4140
DNA (195bp) protein (65aa)

This feature has no annotations

13_1_40cm_3_scaffold_6539_5

Not on your lists

4693..5190
DNA (498bp) protein (166aa)
Transposase n=1 Tax=Streptomyces zinciresistens K42 RepID=G2GPV8_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:KKM62598.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
transposase
13_1_40cm_3_scaffold_6539_6
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5187..6293)
DNA (1107bp) protein (369aa)
Major facilitator superfamily MFS_1 n=1 Tax=Rhodovulum sp. PH10 RepID=J6U9U4_9RHOB
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:EJW09831.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodov
major facilitator transporter
13_1_40cm_3_scaffold_6539_7
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

6336..6578
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EDV1_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:CCF82863.1}; TaxID=1129897 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Nitrolancea.;" source
hypothetical protein
13_1_40cm_3_scaffold_6539_8
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(6688..8610)
DNA (1923bp) protein (641aa)
AMP-dependent synthetase and ligase; K01895 acetyl-CoA synthetase [EC:6.2.1.1] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
AMP-dependent synthetase and ligase n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C7F2_SPHTD
AMP-dependent synthetase and ligase
13_1_40cm_3_scaffold_6539_9
unknown

Not on your lists

8631..8861
DNA (231bp) protein (77aa)

This feature has no annotations

13_1_40cm_3_scaffold_6539_10
unknown

Not on your lists

comp(8806..9339)
DNA (534bp) protein (178aa)

This feature has no annotations

13_1_40cm_3_scaffold_6539_11
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(9464..10249)
DNA (786bp) protein (262aa)
Amidohydrolase 2 n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6U6P9_9CHLR
amidohydrolase family protein; K07045 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
amidohydrolase
13_1_40cm_3_scaffold_6539_12
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

10323..10898
DNA (576bp) protein (192aa)
Probable molybdenum cofactor guanylyltransferase n=1 Tax=Clostridium ultunense Esp RepID=M1ZJU3_9CLOT
molybdenum cofactor guanylyltransferase Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB
13_1_40cm_3_scaffold_6539_13
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

10913..11671
DNA (759bp) protein (253aa)
Electron transfer flavoprotein alpha/beta-subunit n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C919_SPHTD
etfB; electron transfer flavoprotein beta subunit Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
Electron transfer flavoprotein alpha/beta-subunit
13_1_40cm_3_scaffold_6539_14
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

11802..12599
DNA (798bp) protein (266aa)
Electron transfer flavoprotein alpha subunit n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C918_SPHTD
Electron transfer flavoprotein alpha subunit; K03522 electron transfer flavoprotein alpha subunit Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
Electron transfer flavoprotein alpha subunit
13_1_40cm_3_scaffold_6539_15
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

Not on your lists

12709..13470
DNA (762bp) protein (254aa)
cysteinyl-tRNA synthetase (EC:6.1.1.16); K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16] Tax=RBG_16_Chloroflexi_68_14_curated
cysteinyl-tRNA synthetase (EC:6.1.1.16); K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16] id=14628619 bin=bin8_Chloro species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin8_Chloro organism_group=Chloroflexi
cysteinyl-tRNA synthetase (EC:6.1.1.16)
13_1_40cm_3_scaffold_6539_16
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

13481..15025
DNA (1545bp) protein (515aa)
propionyl-CoA carboxylase (EC:6.4.1.3) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
propionyl-CoA carboxylase (EC:6.4.1.3) id=14625386 bin=bin7_NC10_sister species=Conexibacter woesei genus=Conexibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
propionyl-CoA carboxylase (EC:6.4.1.3)
13_1_40cm_3_scaffold_6539_17
R_Deltaproteobacteria_50_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15054..15932
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Halococcus thailandensis JCM 13552 RepID=M0N1T4_9EURY
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Deltaproteobacteria_50_16_curated
hypothetical protein
13_1_40cm_3_scaffold_6539_18
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15925..16137
DNA (213bp) protein (71aa)
Biotin/lipoic acid binding domain protein n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q09BN3_STIAD
biotin/lipoyl attachment domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
biotin/lipoic acid binding domain-containing protein
13_1_40cm_3_scaffold_6539_19
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16134..16826
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5BE45_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX51122.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
13_1_40cm_3_scaffold_6539_20
Desulfarculus baarsii, Desulfarculus, Desulfarculales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16883..17248
DNA (366bp) protein (122aa)
Ribonuclease H n=1 Tax=Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 / 2st14) RepID=E1QGT2_DESB2
ribonuclease H
Ribonuclease H {ECO:0000313|EMBL:ADK84775.1}; Flags: Precursor;; TaxID=644282 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfarculales; Desulfarculaceae; Desulfarculus.;" source="Desulf
13_1_40cm_3_scaffold_6539_21
Actinoplanes sp. N902-109, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17241..17678
DNA (438bp) protein (146aa)
hypothetical protein n=1 Tax=Nocardia sp. BMG111209 RepID=UPI0003776B17
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGL19308.1}; TaxID=649831 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes sp. N902-109.;"
Displaying 21 items

View Taxonomy