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13_1_40cm_3_scaffold_8873

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_8873_1
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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2..793
DNA (792bp) protein (264aa)
secY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Protein translocase subunit SecY id=4716762 bin=GWC2_Methylomirabilis_70_16 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
secY; preprotein translocase subunit SecY
13_1_40cm_3_scaffold_8873_2
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

790..987
DNA (198bp) protein (66aa)
secY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Protein translocase subunit SecY id=4666307 bin=GWA2_Methylomirabilis_73_35 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
secY; preprotein translocase subunit SecY
13_1_40cm_3_scaffold_8873_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

990..1640
DNA (651bp) protein (217aa)
adenylate kinase family protein (EC:2.7.4.3) Tax=GWA2_Rokubacteria_73_35_curated
adenylate kinase; K00939 adenylate kinase [EC:2.7.4.3] id=14625534 bin=bin7_NC10_sister species=Thermodesulfobacterium thermophilum genus=Thermodesulfobacterium taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=bin7_NC10_sister organism_group=NC10
adenylate kinase
13_1_40cm_3_scaffold_8873_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

1637..2431
DNA (795bp) protein (265aa)
methionine aminopeptidase (EC:3.4.11.18); K01265 methionyl aminopeptidase [EC:3.4.11.18] id=14625535 bin=bin7_NC10_sister species=Orenia marismortui genus=Orenia taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
map; methionine aminopeptidase (EC:3.4.11.18)
methionine aminopeptidase, type I Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
13_1_40cm_3_scaffold_8873_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

2428..2649
DNA (222bp) protein (74aa)
Translation initiation factor IF-1 id=4666310 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
infA; translation initiation factor IF-1; K02518 translation initiation factor IF-1 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
infA; translation initiation factor IF-1
13_1_40cm_3_scaffold_8873_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2674..2787
DNA (114bp) protein (38aa)
hypothetical protein; K02919 large subunit ribosomal protein L36 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L36 id=4666311 bin=GWA2_Methylomirabilis_73_35 species=Propionibacterium freudenreichii genus=Propionibacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_3_scaffold_8873_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


2804..3238
DNA (435bp) protein (145aa)
30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
30S ribosomal protein S13 id=4666312 bin=GWA2_Methylomirabilis_73_35 species=Alicyclobacillus acidocaldarius genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsM; 30S ribosomal protein S13
13_1_40cm_3_scaffold_8873_8
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


3241..4251
DNA (1011bp) protein (337aa)
30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
30S ribosomal protein S4 id=4666314 bin=GWA2_Methylomirabilis_73_35 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsD; 30S ribosomal protein S4
13_1_40cm_3_scaffold_8873_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

4260..5240
DNA (981bp) protein (327aa)
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha id=4666368 bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_3_scaffold_8873_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


5237..5710
DNA (474bp) protein (158aa)
50S ribosomal protein L17 id=1724741 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rplQ; 50S ribosomal protein L17; K02879 large subunit ribosomal protein L17 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
50S ribosomal protein L17
13_1_40cm_3_scaffold_8873_11
unknown

Not on your lists

comp(5714..5860)
DNA (147bp) protein (49aa)

This feature has no annotations

13_1_40cm_3_scaffold_8873_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6062..6736)
DNA (675bp) protein (225aa)
dienelactone hydrolase-like enzyme (EC:3.1.1.45); K01061 carboxymethylenebutenolidase [EC:3.1.1.45] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Dienelactone hydrolase-like enzyme id=1724740 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Dienelactone hydrolase family
13_1_40cm_3_scaffold_8873_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6739..7995)
DNA (1257bp) protein (419aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=3775497 bin=GWF2_Methylomirabilis_70_14 species=Acetohalobium arabaticum genus=Acetohalobium taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_3_scaffold_8873_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7992..8930)
DNA (939bp) protein (313aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=3234906 bin=GWC2_Methylomirabilis_70_16 species=Acetohalobium arabaticum genus=Acetohalobium taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_3_scaffold_8873_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(9207..10013)
DNA (807bp) protein (269aa)
thiamine-monophosphate kinase; K00946 thiamine-monophosphate kinase [EC:2.7.4.16] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Thiamine-monophosphate kinase id=1724736 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Desulforudis audaxviator genus=Candidatus Desulforudis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
thiL; thiamine-monophosphate kinase
13_1_40cm_3_scaffold_8873_16
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(10263..10592)
DNA (330bp) protein (110aa)
Thioredoxin id=4814769 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
trxA; thioredoxin 1, redox factor Tax=GWC2_Rokubacteria_70_16_curated
trxA; thioredoxin 1, redox factor
13_1_40cm_3_scaffold_8873_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

11369..12052
DNA (684bp) protein (228aa)
pilR2; nitrogen regulation protein NR(I); K02667 two-component system, NtrC family, response regulator PilR Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Two component, sigma54 specific, transcriptional regulator, Fis family id=4814770 bin=GWC2_Methylomirabilis_70_16 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
two component Fis family sigma54-specific transcriptional regulator
13_1_40cm_3_scaffold_8873_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12163..13101
DNA (939bp) protein (313aa)
id=4814771 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=4814771 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_3_scaffold_8873_19
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13118..13669
DNA (552bp) protein (184aa)
Putative uncharacterized protein id=4912762 bin=GWC2_Geobacteraceae_55_20 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
Putative uncharacterized protein Tax=GWC2_Geobacteraceae_55_20_curated
hypothetical protein
13_1_40cm_3_scaffold_8873_20
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

13777..13926
DNA (150bp) protein (50aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003698F59
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
hypothetical protein
Displaying 20 items

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