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13_1_40cm_3_scaffold_236

Search features with annotation key words

Displaying 25 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_236_1
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(2..175)
DNA (174bp) protein (58aa)
rhomboid family protein Tax=GWC2_Gemmatimonadetes_71_10_curated
13_1_40cm_3_scaffold_236_2

Not on your lists

comp(211..1233)
DNA (1023bp) protein (341aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000
ddl; D-alanine--D-alanine ligase (EC:6.3.2.4)
D-alanine--D-alanine ligase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEL0_GEMAT
13_1_40cm_3_scaffold_236_3
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(1233..2618)
DNA (1386bp) protein (462aa)
cbs; cystathionine beta-synthase (EC:4.2.1.22); K01697 cystathionine beta-synthase [EC:4.2.1.22] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Cystathionine beta-synthase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEM2_GEMAT
Pyridoxal-5'-phosphate-dependent protein beta subunit
13_1_40cm_3_scaffold_236_4

Not on your lists

comp(2602..3228)
DNA (627bp) protein (209aa)
TonB family protein
Gram-negative bacterial tonB protein {ECO:0000313|EMBL:AIA18393.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
13_1_40cm_3_scaffold_236_5
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(3230..5824)
DNA (2595bp) protein (865aa)
DNA mismatch repair protein MutS n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEM6_GEMAT
mutS; DNA mismatch repair protein MutS; K03555 DNA mismatch repair protein MutS Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
DNA mismatch repair protein mutS
13_1_40cm_3_scaffold_236_6
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(5891..6649)
DNA (759bp) protein (253aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_40cm_3_scaffold_236_7
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(6646..7725)
DNA (1080bp) protein (360aa)
holA; putative DNA polymerase III delta subunit (EC:2.7.7.7); K02340 DNA polymerase III subunit delta [EC:2.7.7.7] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
holA; putative DNA polymerase III delta subunit (EC:2.7.7.7)
Putative DNA polymerase III delta subunit n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEM8_GEMAT
13_1_40cm_3_scaffold_236_8
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(8291..8935)
DNA (645bp) protein (215aa)
RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEN0_GEMAT
RNA polymerase ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RBG_16_Gemmatimonadetes_66_8_curated
RNA polymerase sigma factor, sigma-70 family
13_1_40cm_3_scaffold_236_9
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(9147..9686)
DNA (540bp) protein (180aa)
putative ADP-ribose pyrophosphatase (EC:3.6.1.13); K01515 ADP-ribose pyrophosphatase [EC:3.6.1.13] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Putative ADP-ribose pyrophosphatase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEN1_GEMAT
NUDIX hydrolase
13_1_40cm_3_scaffold_236_10
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(9702..10304)
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EFS5_9CHLR
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
protein of unknown function DUF218
13_1_40cm_3_scaffold_236_11
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(10317..11126)
DNA (810bp) protein (270aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABI1_GEMAT
PBS lyase HEAT domain protein repeat-containing protein
PBS lyase HEAT domain protein repeat-containing protein {ECO:0000313|EMBL:AHG87842.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_3_scaffold_236_12
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(11123..12865)
DNA (1743bp) protein (581aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABI2_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_40cm_3_scaffold_236_13
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(12865..13509)
DNA (645bp) protein (215aa)
hypothetical protein
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_40cm_3_scaffold_236_14
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(13506..14048)
DNA (543bp) protein (181aa)
RNA polymerase ECF-type sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABI4_GEMAT
RNA polymerase sigma factor, sigma-70 family
RNA polymerase ECF-type sigma factor Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_40cm_3_scaffold_236_15
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(14127..14780)
DNA (654bp) protein (218aa)
upp; uracil phosphoribosyltransferase (EC:2.4.2.9); K00761 uracil phosphoribosyltransferase [EC:2.4.2.9] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Uracil phosphoribosyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEP3_GEMAT
Uracil phosphoribosyl transferase
13_1_40cm_3_scaffold_236_16
RBG_16_Planctomycetes_64_12_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

14843..15988
DNA (1146bp) protein (382aa)
hypothetical protein n=1 Tax=Nafulsella turpanensis RepID=UPI00035E4FED
Glycosyltransferase Tax=RBG_16_Planctomycetes_64_12_curated
group 1 glycosyl transferase
13_1_40cm_3_scaffold_236_17
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

15948..16700
DNA (753bp) protein (251aa)
glycosyltransferase (EC:2.4.-.-)
Glycosyltransferase {ECO:0000313|EMBL:BAH40163.1}; EC=2.4.-.- {ECO:0000313|EMBL:BAH40163.1};; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" sou
Glycosyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ACD6_GEMAT
13_1_40cm_3_scaffold_236_18
Geitlerinema sp. PCC 7407, Geitlerinema, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

16697..17899
DNA (1203bp) protein (401aa)
Glycosyl transferase group 1 n=1 Tax=Geitlerinema sp. PCC 7407 RepID=K9S3E1_9CYAN
group 1 glycosyl transferase
Glycosyl transferase group 1 {ECO:0000313|EMBL:AFY65147.1}; TaxID=1173025 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Geitlerinema.;" source="Geitlerinema sp. PCC 7407.;"
13_1_40cm_3_scaffold_236_19
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

17937..18674
DNA (738bp) protein (246aa)
Conserved hypothetical signal peptide protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q024E1_SOLUE
signal peptide protein
Conserved hypothetical signal peptide protein {ECO:0000313|EMBL:ABJ83635.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus
13_1_40cm_3_scaffold_236_20
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

18671..21784
DNA (3114bp) protein (1038aa)
Glycosyl hydrolase, BNR repeat n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q024E0_SOLUE
Glycosyl hydrolase, BNR repeat {ECO:0000313|EMBL:ABJ83636.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;"
BNR repeat-containing glycosyl hydrolase
13_1_40cm_3_scaffold_236_21
unknown

Not on your lists

21904..22293
DNA (390bp) protein (130aa)

This feature has no annotations

13_1_40cm_3_scaffold_236_22
Thermodesulfatator indicus, Thermodesulfatator, Thermodesulfobacteriales, Thermodesulfobacteria, Thermodesulfobacteria, Bacteria

Not on your lists

comp(22308..22739)
DNA (432bp) protein (144aa)
General secretion pathway protein G n=1 Tax=Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812) RepID=F8ADF7_THEID
general secretion pathway protein G
General secretion pathway protein G {ECO:0000313|EMBL:AEH45973.1}; Flags: Precursor;; TaxID=667014 species="Bacteria; Thermodesulfobacteria; Thermodesulfobacteriales; Thermodesulfobacteriaceae; Thermo
13_1_40cm_3_scaffold_236_23
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

23027..23983
DNA (957bp) protein (319aa)
Putative PAS/PAC sensor protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TIR4_9CHLR
Putative PAS/PAC sensor protein {ECO:0000313|EMBL:EFH89321.1}; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobact
putative PAS/PAC sensor protein
13_1_40cm_3_scaffold_236_24
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

23989..25116
DNA (1128bp) protein (376aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Kte
Signal transduction histidine kinase (EC:2.7.13.3)
Histidine kinase n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TIR3_9CHLR
13_1_40cm_3_scaffold_236_25
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

25113..26450
DNA (1338bp) protein (446aa)
Two component, sigma54 specific, transcriptional regulator, Fis family id=3102610 bin=GWC2_Methylomirabilis_70_16 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Fis family transcriptional regulator; K07712 two-component system, NtrC family, nitrogen regulation response regulator GlnG Tax=GWC2_Rokubacteria_70_16_curated
Fis family transcriptional regulator
Displaying 25 items

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