ggKbase home page

13_1_40cm_3_scaffold_1256

Search features with annotation key words

Displaying 13 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_1256_1
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(3..620)
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBZ7_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK40756.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
13_1_40cm_3_scaffold_1256_2
unknown

Not on your lists

1028..1228
DNA (201bp) protein (67aa)

This feature has no annotations

13_1_40cm_3_scaffold_1256_3
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

1387..2295
DNA (909bp) protein (303aa)
Putative Thiamine biosynthesis lipoprotein ApbE n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PC31_9BACT rbh
putative thiamine biosynthesis lipoprotein ApbE; K03734 thiamine biosynthesis lipoprotein Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
putative thiamine biosynthesis lipoprotein ApbE
13_1_40cm_3_scaffold_1256_4
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(2438..3316)
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii PF97_9BACT">RepID=D8PF97_9BACT
putative protein TonB
Uncharacterized protein {ECO:0000313|EMBL:CBK41906.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
13_1_40cm_3_scaffold_1256_5
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(3313..3687)
DNA (375bp) protein (125aa)
Biopolymer transport protein ExbD n=1 Tax=Candidatus Nitrospira defluvii PF78_9BACT">RepID=D8PF78_9BACT
exbD3; biopolymer transport protein ExbD
Biopolymer transport protein ExbD {ECO:0000313|EMBL:CBK41887.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
13_1_40cm_3_scaffold_1256_6
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(3677..4102)
DNA (426bp) protein (142aa)
Biopolymer transport protein ExbB n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PC35_9BACT
exbB; biopolymer transport protein Exbb
exbB; biopolymer transport protein Exbb; K03561 biopolymer transport protein ExbB Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
13_1_40cm_3_scaffold_1256_7
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(4277..5407)
DNA (1131bp) protein (377aa)
putative Fe3+ ABC transporter ATP-binding protein (EC:3.6.3.30); K02010 iron(III) transport system ATP-binding protein [EC:3.6.3.30] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
putative Fe3+ ABC transporter ATP-binding protein (EC:3.6.3.30)
ABC transporter, ATP-binding component, putative Fe3+ transport system n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PC36_9BACT
13_1_40cm_3_scaffold_1256_8
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(5430..6950)
DNA (1521bp) protein (507aa)
ABC transporter, permease component, putative Fe3+ transport system n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PC37_9BACT rbh
putative Fe3+ ABC transporter permease; K02011 iron(III) transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
putative Fe3+ ABC transporter permease
13_1_40cm_3_scaffold_1256_9
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(7022..8110)
DNA (1089bp) protein (363aa)
ABC transporter, periplasmic binding component, putative Fe3+ transport system n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PC38_9BACT rbh
putative Fe3+ ABC transporter periplasmic-binding protein
putative Fe3+ ABC transporter periplasmic-binding protein; K02012 iron(III) transport system substrate-binding protein Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
13_1_40cm_3_scaffold_1256_10
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(8169..8600)
DNA (432bp) protein (144aa)
Ferric uptake regulation protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PC39_9BACT
fur; ferric uptake regulation protein; K03711 Fur family transcriptional regulator, ferric uptake regulator Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
fur; ferric uptake regulation protein
13_1_40cm_3_scaffold_1256_11
R_OD1_46_26, Microgenomates, Bacteria

Not on your lists

8819..10321
DNA (1503bp) protein (501aa)
ycbD; aldehyde dehydrogenase ycbD (EC:1.2.1.3) Tax=RIFCSPLOWO2_01_FULL_OD1_46_26_curated
ycbD; aldehyde dehydrogenase ycbD (EC:1.2.1.3) id=14429227 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10 rbh
putative aldehyde dehydrogenase (NAD)
13_1_40cm_3_scaffold_1256_12
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

10410..10994
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PC40_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
hypothetical protein
13_1_40cm_3_scaffold_1256_13
unknown

Not on your lists

comp(11226..11636)
DNA (411bp) protein (137aa)

This feature has no annotations

Displaying 13 items

View Taxonomy
NameRatio
Nitrospirae
76.92%
unknown
15.38%
Microgenomates
7.69%
Nitrospirae: 0.7692307692307693unknown: 0.15384615384615385Microgenomates: 0.07692307692307693Nitrospiraeunknown