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13_1_40cm_3_scaffold_6227

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Displaying 21 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_6227_1
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..249)
DNA (249bp) protein (83aa)
Ammonium transporter {ECO:0000256|RuleBase:RU362002}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
amtB; ammonium transport protein id=14428773 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
amtB; ammonium transporter amt
13_1_40cm_3_scaffold_6227_2
Mycobacterium arupense, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(362..925)
DNA (564bp) protein (188aa)
Cyanate hydratase {ECO:0000256|HAMAP-Rule:MF_00535}; Short=Cyanase {ECO:0000256|HAMAP-Rule:MF_00535};; EC=4.2.1.104 {ECO:0000256|HAMAP-Rule:MF_00535};; Cyanate hydrolase {ECO:0000256|HAMAP-Rule:MF_005
Cyanate hydratase n=1 Tax=Mycobacterium sp. (strain JDM601) RepID=F5Z3C7_MYCSD
cynS; cyanate lyase CynS
13_1_40cm_3_scaffold_6227_3
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(927..1415)
DNA (489bp) protein (163aa)
cynS; cyanate hydratase (EC:4.2.1.104)
Cyanate hydratase {ECO:0000256|HAMAP-Rule:MF_00535, ECO:0000313|EMBL:CBK41115.1}; Short=Cyanase {ECO:0000256|HAMAP-Rule:MF_00535};; EC=4.2.1.104 {ECO:0000256|HAMAP-Rule:MF_00535, ECO:0000313|EMBL:CBK4
Cyanate hydratase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PD06_9BACT
13_1_40cm_3_scaffold_6227_4
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(1456..2328)
DNA (873bp) protein (291aa)
nitrate transport ATP-binding subunits C and D Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
Nitrate transport ATP-binding subunits C and D id=2315224 bin=GWB2_Nitrospirae_rel_47_37 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum) rbh
nitrate transport ATP-binding subunits C and D
13_1_40cm_3_scaffold_6227_5
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(2332..3228)
DNA (897bp) protein (299aa)
ABC-type transporter, integral membrane subunit n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IXA4_9BACT rbh
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
nitrate ABC transporter permease
13_1_40cm_3_scaffold_6227_6
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(3672..4013)
DNA (342bp) protein (114aa)
Putative nitrate transporter component, nrtA n=1 Tax=Roseovarius sp. 217 RepID=A3W4D0_9RHOB
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
nitrate transporter component, nrtA
13_1_40cm_3_scaffold_6227_7
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(4063..4635)
DNA (573bp) protein (191aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component id=2315226 bin=GWB2_Nitrospirae_rel_47_37 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component
13_1_40cm_3_scaffold_6227_8
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(5237..6460)
DNA (1224bp) protein (408aa)
Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) RepID=D6Z085_DESAT
Fis family transcriptional regulator; K02584 Nif-specific regulatory protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
Fis family transcriptional regulator
13_1_40cm_3_scaffold_6227_9
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(6770..8179)
DNA (1410bp) protein (470aa)
glnA; glutamine synthetase (EC:6.3.1.2); K01915 glutamine synthetase [EC:6.3.1.2] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
glnA; glutamine synthetase (EC:6.3.1.2)
Glutamine synthetase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PD04_9BACT
13_1_40cm_3_scaffold_6227_10
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(8285..9526)
DNA (1242bp) protein (414aa)
putative (Protein-PII) uridylyltransferase (EC:2.7.7.59); K00990 [protein-PII] uridylyltransferase [EC:2.7.7.59] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
putative (Protein-PII) uridylyltransferase (EC:2.7.7.59)
Bifunctional uridylyltransferase/uridylyl-removing enzyme n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PD03_9BACT
13_1_40cm_3_scaffold_6227_11
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(10949..11287)
DNA (339bp) protein (113aa)
Nitrogen regulatory protein PII n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PD02_9BACT
glnB; nitrogen regulatory protein PII
Nitrogen regulatory protein PII {ECO:0000313|EMBL:CBK41111.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
13_1_40cm_3_scaffold_6227_12
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(11378..12709)
DNA (1332bp) protein (444aa)
Ammonium transporter Amt n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PD01_9BACT
amtB; ammonium transporter amt
Ammonium transporter {ECO:0000256|RuleBase:RU362002}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
13_1_40cm_3_scaffold_6227_13
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(12783..13832)
DNA (1050bp) protein (350aa)
nadE; NAD(+) synthase (glutamine-hydrolyzing) (EC:6.3.5.1); K01950 NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
nadE; NAD(+) synthase (glutamine-hydrolyzing) (EC:6.3.5.1)
NAD(+) synthase (Glutamine-hydrolyzing) n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCZ9_9BACT
13_1_40cm_3_scaffold_6227_14
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(13835..14506)
DNA (672bp) protein (224aa)
nadE; NAD(+) synthase (glutamine-hydrolyzing) (EC:6.3.5.1); K01950 NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
nadE; NAD(+) synthase (glutamine-hydrolyzing) (EC:6.3.5.1)
NAD(+) synthase (Glutamine-hydrolyzing) n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCZ9_9BACT
13_1_40cm_3_scaffold_6227_15
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(14716..15603)
DNA (888bp) protein (296aa)
Urease accessory protein UreD; K03190 urease accessory protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
Urease accessory protein UreD id=2317446 bin=GWA2_Methylomirabilis_73_35 species=Gordonia neofelifaecis genus=Gordonia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Urease accessory protein UreD
13_1_40cm_3_scaffold_6227_16
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(15607..16281)
DNA (675bp) protein (225aa)
urease accessory protein UreG n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=UPI0001C2AFE0
urease accessory protein UreG; K03189 urease accessory protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
urease accessory protein UreG
13_1_40cm_3_scaffold_6227_17
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(16293..16814)
DNA (522bp) protein (174aa)
Urease accessory protein UreF n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=UPI0001C2AFE1
urease accessory protein UreF Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
urease accessory protein ureF
13_1_40cm_3_scaffold_6227_18
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(16992..18716)
DNA (1725bp) protein (575aa)
ureC; urease subunit alpha (EC:3.5.1.5); K01428 urease subunit alpha [EC:3.5.1.5] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
urease (EC:3.5.1.5)
urease subunit alpha n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=UPI0001C2AFE2 rbh
13_1_40cm_3_scaffold_6227_19
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(18713..19195)
DNA (483bp) protein (161aa)
urease subunit beta (EC:3.5.1.5)
Urease, beta subunit:Urease, gamma subunit n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=UPI0001C2AFE3
urease, beta subunit Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
13_1_40cm_3_scaffold_6227_20
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(19245..19547)
DNA (303bp) protein (101aa)
urease subunit gamma; K01430 urease subunit gamma [EC:3.5.1.5] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
urease subunit gamma n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=UPI0001C2AFE4
urease subunit gamma
13_1_40cm_3_scaffold_6227_21
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19705..19824
DNA (120bp) protein (40aa)
urea transporter n=1 Tax=Kaistia granuli RepID=UPI00036A60D4
Urea transporter {ECO:0000313|EMBL:EKS31284.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
Displaying 21 items

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