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13_1_40cm_3_scaffold_1653

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Displaying 30 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_1653_1
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

2..3208
DNA (3207bp) protein (1069aa)
TonB-dependent outer membrane receptor n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MDP2_RHOM4
TonB-dependent outer membrane receptor Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
TonB-dependent outer membrane receptor
13_1_40cm_3_scaffold_1653_2
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(3216..4292)
DNA (1077bp) protein (359aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA17_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
permease YjgP/YjgQ family protein
13_1_40cm_3_scaffold_1653_3
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(4289..5752)
DNA (1464bp) protein (488aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA16_GEMAT
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
permease YjgP/YjgQ family protein
13_1_40cm_3_scaffold_1653_4
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

5783..10591
DNA (4809bp) protein (1603aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA15_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_40cm_3_scaffold_1653_5
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

10557..11861
DNA (1305bp) protein (435aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA15_GEMAT
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
hypothetical protein
13_1_40cm_3_scaffold_1653_6
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

11858..12796
DNA (939bp) protein (313aa)
Glutamine cyclotransferase-related protein n=1 Tax=Prevotella sp. CAG:279 RepID=R7HPH9_9BACT
peptidase M28 Tax=RBG_16_Gemmatimonadetes_66_8_curated
peptidase M28
13_1_40cm_3_scaffold_1653_7
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

12954..13364
DNA (411bp) protein (137aa)
Competence protein ComEA-like protein with helix-hairpin-helix repeat region n=1 Tax=Arthrobacter sp. SJCon RepID=L8TPB2_9MICC
competence protein ComEA-like protein with helix-hairpin-helix repeat region; K02237 competence protein ComEA Tax=RBG_16_Gemmatimonadetes_66_8_curated
helix-hairpin-helix repeat-containing competence protein ComEA
13_1_40cm_3_scaffold_1653_8
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

13530..14642
DNA (1113bp) protein (371aa)
Type IV pilus assembly protein PilB n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA14_GEMAT
pilB; type IV pilus biogenesis protein PilB; K02652 type IV pilus assembly protein PilB Tax=RBG_16_Gemmatimonadetes_66_8_curated
type II secretion system protein E
13_1_40cm_3_scaffold_1653_9
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

14617..15066
DNA (450bp) protein (150aa)
Type IV pilus biogenesis ATPase PilB n=4 Tax=Geobacter RepID=Q39VU7_GEOMG id=5224980 bin=16ft_combo_ws3_JS1 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
pilB; type IV pilus biogenesis protein PilB; K02652 type IV pilus assembly protein PilB Tax=RBG_16_Gemmatimonadetes_66_8_curated
pilF; type IV pilus assembly protein
13_1_40cm_3_scaffold_1653_10
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

15080..16219
DNA (1140bp) protein (380aa)
Twitching mobility protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA13_GEMAT
pilT; twitching mobility protein; K02669 twitching motility protein PilT Tax=RBG_16_Gemmatimonadetes_66_8_curated
twitching motility protein
13_1_40cm_3_scaffold_1653_11
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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16243..17442
DNA (1200bp) protein (400aa)
Type IV pilus assembly protein PilC n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA12_GEMAT
pilC; type IV pilus assembly protein PilC; K02653 type IV pilus assembly protein PilC Tax=RBG_16_Gemmatimonadetes_66_8_curated
Type II secretion system F domain-containing protein
13_1_40cm_3_scaffold_1653_12
RBG_16_Aminicenantes_63_16_curated, Aminicenantes, Bacteria

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17545..18306
DNA (762bp) protein (254aa)
hypothetical protein Tax=RBG_16_Aminicenantes_63_16_curated
hypothetical protein id=24469341 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein
13_1_40cm_3_scaffold_1653_13
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(18335..19180)
DNA (846bp) protein (282aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein id=24603914 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
13_1_40cm_3_scaffold_1653_14
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

19428..20111
DNA (684bp) protein (228aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000362ADA2
Xylose isomerase domain-containing protein TIM barrel
Xylose isomerase domain-containing protein TIM barrel {ECO:0000313|EMBL:AHG88425.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_3_scaffold_1653_15
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

20196..21905
DNA (1710bp) protein (570aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7A9_GEMAT rbh
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
GMC oxidoreductase
13_1_40cm_3_scaffold_1653_16
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

21905..22489
DNA (585bp) protein (195aa)
Tat pathway signal sequence domain-containing protein n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MH69_RHOM4
Tat pathway signal sequence domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Tat pathway signal sequence domain-containing protein
13_1_40cm_3_scaffold_1653_17
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

23164..23679
DNA (516bp) protein (172aa)
Putative oxidoreductase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7B3_GEMAT
putative oxidoreductase Tax=RBG_16_Gemmatimonadetes_66_8_curated
oxidoreductase domain protein
13_1_40cm_3_scaffold_1653_18
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

23676..24770
DNA (1095bp) protein (365aa)
Succinylglutamate desuccinylase/aspartoacylase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01VV8_SOLUE
Succinylglutamate desuccinylase/aspartoacylase
Succinylglutamate desuccinylase/aspartoacylase {ECO:0000313|EMBL:AHG89159.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_3_scaffold_1653_19
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(24828..27488)
DNA (2661bp) protein (887aa)
Oxidoreductase domain protein n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SFA6_RHOMR
rocC; amino acid permease rocC Tax=RBG_16_Gemmatimonadetes_66_8_curated
oxidoreductase domain-containing protein
13_1_40cm_3_scaffold_1653_20
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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comp(27513..28727)
DNA (1215bp) protein (405aa)
putative nucleoside transporter Tax=GWC2_Gemmatimonadetes_71_10_curated
putative nucleoside transporter id=12556627 bin=CNBR_ACIDO species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
putative nucleoside transporter
13_1_40cm_3_scaffold_1653_21
unknown

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28810..29550
DNA (741bp) protein (247aa)

This feature has no annotations

13_1_40cm_3_scaffold_1653_22
R_Omnitrophica_45_10b, Omnitrophica, Bacteria

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29726..30577
DNA (852bp) protein (284aa)
SulP family sulfate permease n=1 Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0AK02_IGNAJ
sulfate transporter
Tax=RIFCSPLOWO2_01_FULL_Omnitrophica_45_10b_curated
13_1_40cm_3_scaffold_1653_23
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(30574..33744)
DNA (3171bp) protein (1057aa)
polyphosphate kinase (EC:2.7.4.1) Tax=RBG_16_Gemmatimonadetes_66_8_curated
Polyphosphate kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB08_GEMAT
Polyphosphate kinase
13_1_40cm_3_scaffold_1653_24
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(33754..34608)
DNA (855bp) protein (285aa)
polyphosphate kinase (EC:2.7.4.1) Tax=RBG_16_Gemmatimonadetes_66_8_curated
Uncharacterized protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5PA99_9SPHN
hypothetical protein
13_1_40cm_3_scaffold_1653_25

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comp(34619..35527)
DNA (909bp) protein (303aa)
hypothetical protein n=1 Tax=Spirosoma spitsbergense RepID=UPI000365A012
Marine sediment metagenome DNA, contig: S12H4_L01509 {ECO:0000313|EMBL:GAI87705.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
hypothetical protein
13_1_40cm_3_scaffold_1653_26
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

35927..37525
DNA (1599bp) protein (533aa)
two-component histidine kinase; K02668 two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Two-component histidine kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9X0_GEMAT
two-component histidine kinase
13_1_40cm_3_scaffold_1653_27
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

37525..38925
DNA (1401bp) protein (467aa)
NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9W9_GEMAT
NtrC family two-component response regulator Tax=GWC2_Gemmatimonadetes_71_10_curated
sigma-54 factor interaction domain-containing protein
13_1_40cm_3_scaffold_1653_28
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

38891..39622
DNA (732bp) protein (244aa)
glycosyl transferase family protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
ribosomal RNA adenine methylase transferase id=12554429 bin=CNBR_ACIDO species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
glycosyl transferase family protein
13_1_40cm_3_scaffold_1653_29
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

39619..40344
DNA (726bp) protein (242aa)
glycosyl transferase n=1 Tax=Spirulina subsalsa RepID=UPI00031BACE1
glycosyltransferase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
glycosyl transferase family protein
13_1_40cm_3_scaffold_1653_30
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

40341..41525
DNA (1185bp) protein (395aa)
Uncharacterized protein n=1 Tax=planctomycete KSU-1 RepID=I3IR68_9PLAN
Uncharacterized protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein
Displaying 30 items

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