ggKbase home page

13_1_40cm_3_scaffold_1812

Search features with annotation key words

Displaying 24 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_1812_1
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

2..1918
DNA (1917bp) protein (639aa)
TonB-dependent receptor plug n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MH24_RHOM4
TonB-dependent receptor plug
TonB-dependent receptor plug {ECO:0000313|EMBL:ACY47809.1}; Flags: Precursor;; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" s
13_1_40cm_3_scaffold_1812_2
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

1947..3407
DNA (1461bp) protein (487aa)
Uncharacterized protein n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MH25_RHOM4
RagB/SusD domain-containing protein
RagB/SusD domain-containing protein {ECO:0000313|EMBL:AHG91388.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_3_scaffold_1812_3
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(3376..4782)
DNA (1407bp) protein (469aa)
NAD(P) transhydrogenase subunit beta; K00325 NAD(P) transhydrogenase subunit beta [EC:1.6.1.2] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
NAD(P) transhydrogenase subunit beta id=4381502 bin=GWC2_Ignavibacteria_56_12 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
NAD(P) transhydrogenase subunit beta
13_1_40cm_3_scaffold_1812_4
RBG_16_Zixibacteria_53_22_curated, Zixibacteria, Bacteria

Not on your lists

comp(4779..5057)
DNA (279bp) protein (93aa)
nicotinamide nucleotide transhydrogenase subunit alpha; K00324 NAD(P) transhydrogenase subunit alpha [EC:1.6.1.2] Tax=RBG_16_Zixibacteria_53_22_curated
Nicotinamide nucleotide transhydrogenase, subunit alpha id=4913309 bin=GWA2_Ignavibacteria_55_11 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
nicotinamide nucleotide transhydrogenase subunit alpha
13_1_40cm_3_scaffold_1812_5
Candidatus Acetothermus autotrophicum, Candidatus Acetothermum, Acetothermia, Bacteria

Not on your lists

comp(5054..6145)
DNA (1092bp) protein (364aa)
NAD(P) transhydrogenase subunit alpha n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5ST64_9BACT
NAD(P) transhydrogenase subunit alpha {ECO:0000313|EMBL:BAL59350.1}; TaxID=1446466 species="Bacteria; Acetothermia; Candidatus Acetothermum.;" source="Candidatus Acetothermus autotrophicum.;"
alanine dehydrogenase/PNT domain protein
13_1_40cm_3_scaffold_1812_6
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6142..7200)
DNA (1059bp) protein (353aa)
glycosyl transferase family 1 n=1 Tax=Cupriavidus sp. BIS7 RepID=UPI00031656CC
Glycosyl transferase family 1 {ECO:0000313|EMBL:KDP87545.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus
glycosyl transferase
13_1_40cm_3_scaffold_1812_7
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(7237..7677)
DNA (441bp) protein (147aa)
TM2 domain protein n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WPQ1_9ACTO
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein
13_1_40cm_3_scaffold_1812_8
RBG_13_Deltaproteobacteria_60_28_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7797..8045
DNA (249bp) protein (83aa)
hypothetical protein n=1 Tax=Orenia marismortui RepID=UPI000365AEAE
hypothetical protein Tax=RBG_13_Deltaproteobacteria_60_28_curated
membrane protein
13_1_40cm_3_scaffold_1812_9
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

Not on your lists

comp(8046..8438)
DNA (393bp) protein (131aa)
endoribonuclease L-PSP Tax=RBG_16_Armatimonadetes_67_12_curated
hypothetical protein id=14632419 bin=bin9_gal15 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=bin9_gal15 organism_group=GAL15
endoribonuclease L-PSP
13_1_40cm_3_scaffold_1812_10
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(8435..8605)
DNA (171bp) protein (57aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
13_1_40cm_3_scaffold_1812_11

Not on your lists

comp(9296..9748)
DNA (453bp) protein (151aa)
Putative uncharacterized protein n=1 Tax=uncultured bacterium BAC-L1N9 RepID=Q4JIS0_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:AAY89242.1}; TaxID=333371 species="Bacteria; environmental samples.;" source="uncultured bacterium BAC-L1N9.;"
13_1_40cm_3_scaffold_1812_12

Not on your lists

9839..10219
DNA (381bp) protein (127aa)
HTH-type transcriptional repressor YtrA n=1 Tax=Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB) RepID=K4LIS1_THEPS
Uncharacterized protein {ECO:0000313|EMBL:KKN68121.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
ytrA; HTH-type transcriptional repressor YtrA
13_1_40cm_3_scaffold_1812_13
RBG_16_Armatimonadetes_58_9_curated, Armatimonadetes, Bacteria

Not on your lists

10216..11112
DNA (897bp) protein (299aa)
ABC transporter related protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJV6_9FIRM
ABC transporter; K09687 antibiotic transport system ATP-binding protein Tax=RBG_16_Armatimonadetes_58_9_curated
ABC transporter-like protein
13_1_40cm_3_scaffold_1812_14
unknown

Not on your lists

11123..11731
DNA (609bp) protein (203aa)

This feature has no annotations

13_1_40cm_3_scaffold_1812_15
unknown

Not on your lists

11724..12818
DNA (1095bp) protein (365aa)

This feature has no annotations

13_1_40cm_3_scaffold_1812_16
unknown

Not on your lists

12809..13951
DNA (1143bp) protein (381aa)

This feature has no annotations

13_1_40cm_3_scaffold_1812_17
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

14119..15438
DNA (1320bp) protein (440aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
hypothetical protein id=16791870 bin=RBG_16_Aminicenantes_63_16_plus species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
hypothetical protein
13_1_40cm_3_scaffold_1812_18
Brevibacillus panacihumi, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(15454..16359)
DNA (906bp) protein (302aa)
ribonucleotide-diphosphate reductase subunit beta (EC:1.17.4.1)
hypothetical protein n=1 Tax=Alicyclobacillus pohliae RepID=UPI0003612484
Ribonucleoside-triphosphate reductase {ECO:0000313|EMBL:EST53418.1}; TaxID=1408254 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Brevibacillus.;" source="Brevibacillus panacihu
13_1_40cm_3_scaffold_1812_19
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

16374..16865
DNA (492bp) protein (164aa)
DinB family protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
DinB family protein id=1250026 bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
DinB family protein
13_1_40cm_3_scaffold_1812_20
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

16902..17993
DNA (1092bp) protein (364aa)
ada; regulatory protein Ada (EC:2.1.1.63); K10778 AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] T
hypothetical protein n=1 Tax=Fischerella sp. PCC 9339 RepID=UPI0002D97FB9
methylated-DNA/protein-cysteine methyltransferase
13_1_40cm_3_scaffold_1812_21
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(18093..20741)
DNA (2649bp) protein (883aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6I5_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
hypothetical protein
13_1_40cm_3_scaffold_1812_22
unknown

Not on your lists

comp(20851..21354)
DNA (504bp) protein (168aa)

This feature has no annotations

13_1_40cm_3_scaffold_1812_23
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

21508..21816
DNA (309bp) protein (103aa)
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
13_1_40cm_3_scaffold_1812_24
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

21943..23223
DNA (1281bp) protein (427aa)
glucose-methanol-choline oxidoreductase Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Glucose-methanol-choline oxidoreductase id=4715558 bin=GWA2__Bacteriovorax-rel_49_15 species=Leptonema illini genus=Leptonema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWA2__Bacteriovorax-rel_49_15 organism_group=Deltaproteobacteria
glucose-methanol-choline oxidoreductase
Displaying 24 items

View Taxonomy