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13_1_40cm_3_scaffold_2621

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_2621_1
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..854
DNA (852bp) protein (284aa)
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6Z8I4_9RHOO
L-carnitine dehydratase/bile acid-inducible protein F {ECO:0000313|EMBL:ENO90673.1}; TaxID=1123367 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" sour
acyl-CoA transferase
13_1_40cm_3_scaffold_2621_2
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(881..1711)
DNA (831bp) protein (277aa)
type 11 methyltransferase id=14429635 bin=bin3_NC10 species=unknown genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
type 11 methyltransferase Tax=CSP1_5_NC10
type 11 methyltransferase
13_1_40cm_3_scaffold_2621_3
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

1802..4744
DNA (2943bp) protein (981aa)
hypothetical protein; K03701 excinuclease ABC subunit A Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
excinuclease ABC subunit A; K03701 excinuclease ABC subunit A id=12555743 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
uvrA; excinuclease ABC subunit A
13_1_40cm_3_scaffold_2621_4
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

5080..5889
DNA (810bp) protein (270aa)
lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; K02535 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curat
lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC:3.5.1.-); K02535 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] id=12555744 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
13_1_40cm_3_scaffold_2621_5
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

6096..6590
DNA (495bp) protein (165aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
13_1_40cm_3_scaffold_2621_6
RBG_16_Deltaproteobacteria_48_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6824..7474
DNA (651bp) protein (217aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0003667D48
methyltransferase Tax=RBG_16_Deltaproteobacteria_48_10_curated
methyltransferase
13_1_40cm_3_scaffold_2621_7
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(7579..8685)
DNA (1107bp) protein (369aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
Radical SAM domain protein id=2892300 bin=GWC1_Spirochaetes_27_15 species=Denitrovibrio acetiphilus genus=Denitrovibrio taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=GWC1_Spirochaetes_27_15 organism_group=Spirochaetes
hypothetical protein
13_1_40cm_3_scaffold_2621_8
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(8740..8844)
DNA (105bp) protein (35aa)
radical SAM protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
13_1_40cm_3_scaffold_2621_9
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(8905..9171)
DNA (267bp) protein (89aa)
id=12555745 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
id=12555745 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
13_1_40cm_3_scaffold_2621_10
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(9282..9623)
DNA (342bp) protein (114aa)
anti-sigma-factor antagonist; K04749 anti-sigma B factor antagonist Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
anti-sigma-factor antagonist; K04749 anti-sigma B factor antagonist id=12555746 bin=CNBR_ACIDO species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
anti-anti-sigma factor family protein
13_1_40cm_3_scaffold_2621_11
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(9623..10258)
DNA (636bp) protein (212aa)
sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
ECF subfamily RNA polymerase sigma-24 factor id=12555747 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
sigma-70 family RNA polymerase sigma factor
13_1_40cm_3_scaffold_2621_12
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

10286..11536
DNA (1251bp) protein (417aa)
diaminopimelate decarboxylase; K01586 diaminopimelate decarboxylase [EC:4.1.1.20] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
diaminopimelate decarboxylase; K01586 diaminopimelate decarboxylase [EC:4.1.1.20] id=12555748 bin=CNBR_ACIDO species=Roseomonas sp. B5 genus=Roseomonas taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
diaminopimelate decarboxylase (EC:4.1.1.20)
13_1_40cm_3_scaffold_2621_13
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

11536..12129
DNA (594bp) protein (198aa)
tmk; dTMP kinase (EC:2.7.4.9)
thymidylate kinase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
thymidylate kinase id=12555749 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
13_1_40cm_3_scaffold_2621_14
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(12095..12859)
DNA (765bp) protein (255aa)
putative phosphoribosyl transferase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
comF; competence protein F id=12555750 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
phosphoribosyltransferase
13_1_40cm_3_scaffold_2621_15
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(12846..13784)
DNA (939bp) protein (313aa)
Sigma-54 interaction domain protein n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LIK9_CHLTF
sigma-54 dependent trancsriptional regulator Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
sigma-54 interaction domain-containing protein
13_1_40cm_3_scaffold_2621_16
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(13898..14278)
DNA (381bp) protein (127aa)
Iojap-related protein; K09710 ribosome-associated protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
iojap superfamily protein; K09710 ribosome-associated protein id=12555751 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Iojap-related protein
13_1_40cm_3_scaffold_2621_17
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(14265..14891)
DNA (627bp) protein (209aa)
nicotinate (nicotinamide) nucleotide adenylyltransferase; K00969 nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
nadD; nicotinic acid mononucleotide adenylyltransferase (EC:2.7.7.18); K00969 nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] id=12555752 bin=CNBR_ACIDO species=Pseudomonas mendocina genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
nicotinate (nicotinamide) nucleotide adenylyltransferase (EC:2.7.7.18)
13_1_40cm_3_scaffold_2621_18
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(14888..15175)
DNA (288bp) protein (96aa)
Obg family GTPase CgtA; K03979 GTP-binding protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
obgE; GTPase ObgE; K03979 GTP-binding protein id=12555753 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
obgE; GTPase ObgE
Displaying 18 items

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