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13_1_40cm_3_scaffold_12188

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_12188_1
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

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1..1707
DNA (1707bp) protein (569aa)
Type II and III secretion system protein, secretin n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Q2INN8_ANADE
type IV pilus secretin PilQ Tax=RBG_16_Acidobacteria_68_9_curated
type II and III secretion system protein, secretin
13_1_40cm_3_scaffold_12188_2
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

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1715..2881
DNA (1167bp) protein (389aa)
chorismate synthase; K01736 chorismate synthase [EC:4.2.3.5] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
Chorismate synthase id=1832169 bin=GWD2_Deltaproteobacteria_55_8 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
aroC; chorismate synthase
13_1_40cm_3_scaffold_12188_3
R_WOR_2_68_15, WOR-2, Bacteria

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2884..3396
DNA (513bp) protein (171aa)
shikimate kinase; K00891 shikimate kinase [EC:2.7.1.71] Tax=RIFCSPHIGHO2_02_FULL_WOR_2_68_15_curated
shikimate kinase (EC:2.7.1.71)
Shikimate kinase id=4815965 bin=GWC2_Deltaproteobacteria_55_46 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_55_46 organism_group=Deltaproteobacteria organism_desc=Clade sibling to the Geobacter/Pelobacter
13_1_40cm_3_scaffold_12188_4
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

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3422..4510
DNA (1089bp) protein (363aa)
3-dehydroquinate synthase (EC:4.2.3.4); K01735 3-dehydroquinate synthase [EC:4.2.3.4] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
3-dehydroquinate synthase id=1832128 bin=GWD2_Deltaproteobacteria_55_8 species=Desulfotomaculum nigrificans genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
3-dehydroquinate synthase
13_1_40cm_3_scaffold_12188_5
unknown

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4565..5398
DNA (834bp) protein (278aa)

This feature has no annotations

13_1_40cm_3_scaffold_12188_6
RHI_Planctomycetes_52_36, Planctomycetes, Bacteria

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5380..6384
DNA (1005bp) protein (335aa)
hypothetical protein n=1 Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI000378EB65
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Planctomycetes_52_36_curated
hypothetical protein
13_1_40cm_3_scaffold_12188_7
RLO_Nitrospinae_45_22, Nitrospinae, Bacteria

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6390..7316
DNA (927bp) protein (309aa)
PfkB domain protein id=5007765 bin=GWA2_Deltaproteo_65_63 species=mine drainage metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria
ribokinase-like domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Nitrospinae_45_22_curated
ribokinase-like domain-containing protein
13_1_40cm_3_scaffold_12188_8
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7327..8298
DNA (972bp) protein (324aa)
mfd; transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
Transcription-repair coupling factor id=1801652 bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
mfd; transcription-repair coupling factor
Displaying 8 items

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