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13_1_40cm_3_scaffold_542

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Displaying 27 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_542_1
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(3..989)
DNA (987bp) protein (329aa)
Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein {ECO:0000313|EMBL:CDM64777.1}; EC=1.17.1.4 {ECO:0000313|EMBL:CDM64777.1};; TaxID=454194 species="Bacteria; Acidobacteri
aldehyde oxidase n=1 Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B67868
aldehyde oxidase and xanthine dehydrogenase molybdopterin-binding subunit
13_1_40cm_3_scaffold_542_2
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(1126..1785)
DNA (660bp) protein (220aa)
(2Fe-2S)-binding domain-containing protein n=1 Tax=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) RepID=E8R1L8_ISOPI
Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS-like protein {ECO:0000313|EMBL:CDM64778.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.
(2Fe-2S)-binding domain-containing protein
13_1_40cm_3_scaffold_542_3
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1992..2969)
DNA (978bp) protein (326aa)
5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC:5.3.3.10)
5-carboxymethyl-2-hydroxymuconate delta-isomerase {ECO:0000313|EMBL:ABG05298.1}; EC=5.3.3.10 {ECO:0000313|EMBL:ABG05298.1};; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobactera
5-carboxymethyl-2-hydroxymuconate delta-isomerase n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1ATI0_RUBXD
13_1_40cm_3_scaffold_542_4
bacterium UASB14, Bacteria

Not on your lists

comp(3091..3633)
DNA (543bp) protein (181aa)
Putative A-signal production regulator n=1 Tax=uncultured bacterium RepID=Q20JX6_9BACT
Putative A-signal production regulator {ECO:0000313|EMBL:GAK54649.1}; TaxID=1499966 species="Bacteria.;" source="bacterium UASB14.;"
hoxA; two component sigma-54-dependent hydrogenase transcriptional regulator, Fis family
13_1_40cm_3_scaffold_542_5
RBG_13_RIF03_48_7_curated, RIF3, Bacteria

Not on your lists

comp(3665..5035)
DNA (1371bp) protein (457aa)
hypothetical protein n=1 Tax=Leptolyngbya boryana RepID=UPI00037AACE3
multi-sensor signal transduction histidine kinase Tax=RBG_13_RIF03_48_7_curated
response regulator receiver sensor signal transduction histidine kinase
13_1_40cm_3_scaffold_542_6
unknown

Not on your lists

comp(5055..6509)
DNA (1455bp) protein (485aa)

This feature has no annotations

13_1_40cm_3_scaffold_542_7
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(7107..7520)
DNA (414bp) protein (138aa)
hypothetical protein n=1 Tax=Cupriavidus sp. BIS7 RepID=UPI00037E4237
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains {ECO:0000313|EMBL:CDM67090.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomo
chemotaxis protein
13_1_40cm_3_scaffold_542_8
unknown

Not on your lists

comp(7507..7665)
DNA (159bp) protein (53aa)

This feature has no annotations

13_1_40cm_3_scaffold_542_9
RBG_16_RIF03_38_10_curated, RIF03, Bacteria

Not on your lists

8184..9251
DNA (1068bp) protein (356aa)
Multi-sensor signal transduction histidine kinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSI9_9BACT
PAS/PAC domain-containing protein Tax=RBG_16_RIF03_38_10_curated
multi-sensor signal transduction histidine kinase
13_1_40cm_3_scaffold_542_10
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

9268..9918
DNA (651bp) protein (217aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSJ0_9BACT
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:EEF57190.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3
two component LuxR family transcriptional regulator
13_1_40cm_3_scaffold_542_11
unknown

Not on your lists

10466..10624
DNA (159bp) protein (53aa)

This feature has no annotations

13_1_40cm_3_scaffold_542_12
CG_Arma_02, Armatimonadetes, Bacteria

Not on your lists

10617..11090
DNA (474bp) protein (158aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002E5E19B
PAS/PAC sensor hybrid histidine kinase Tax=CG_Arma_02
PAS domain S-box protein
13_1_40cm_3_scaffold_542_13
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11637..11936
DNA (300bp) protein (100aa)
Putative PAS/PAC sensor protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6V1_9BACT
PAS/PAC sensor signal transduction histidine kinase Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PAS/PAC sensor signal transduction histidine kinase
13_1_40cm_3_scaffold_542_14
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11936..14089
DNA (2154bp) protein (718aa)
Histidine kinase (EC:2.7.13.3)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0003162EAB
two-component hybrid sensor and regulator Tax=RBG_16_Gamma2_65_34_curated
13_1_40cm_3_scaffold_542_15
RBG_16_Deltaproteobacteria_48_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14086..18009
DNA (3924bp) protein (1308aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI00036429AA rbh
PAS/PAC sensor hybrid histidine kinase Tax=RBG_16_Deltaproteobacteria_48_10_curated
PAS domain S-box
13_1_40cm_3_scaffold_542_16
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18064..18273
DNA (210bp) protein (70aa)
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47ED8_DECAR
response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) {ECO:0000313|EMBL:AAZ46793.1}; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rh
13_1_40cm_3_scaffold_542_17
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

18292..19707
DNA (1416bp) protein (472aa)
Sigma-54 dependent DNA-binding response regulator Nla28 n=1 Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8CGM1_MYXFH
sigma-54 dependent DNA-binding response regulator; K07714 two-component system, NtrC family, response regulator AtoC Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
sigma-54 dependent DNA-binding response regulator Nla28
13_1_40cm_3_scaffold_542_18
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

20017..21168
DNA (1152bp) protein (384aa)
Protein kinase n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UTG9_ROSS1
protein kinase
Protein kinase {ECO:0000313|EMBL:ABQ89922.1}; TaxID=357808 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus sp. (strain
13_1_40cm_3_scaffold_542_19
unknown

Not on your lists

21165..21284
DNA (120bp) protein (40aa)

This feature has no annotations

13_1_40cm_3_scaffold_542_trna_1
unknown

Not on your lists

comp(21188..21261)
DNA (74bp)
transferRNA
13_1_40cm_3_scaffold_542_20
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(21338..22378)
DNA (1041bp) protein (347aa)
von Willebrand factor type A domain protein n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LG47_CHLTF
Mg-chelatase subunit ChlD {ECO:0000313|EMBL:CDM66740.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
von Willebrand factor type A domain-containing protein
13_1_40cm_3_scaffold_542_21
unknown

Not on your lists

22697..23173
DNA (477bp) protein (159aa)

This feature has no annotations

13_1_40cm_3_scaffold_542_22
unknown

Not on your lists

23275..23472
DNA (198bp) protein (66aa)

This feature has no annotations

13_1_40cm_3_scaffold_542_23
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(23609..24547)
DNA (939bp) protein (313aa)
Superfamily II RNA helicase {ECO:0000313|EMBL:CDM64670.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
ATP-dependent DNA helicase id=4764698 bin=GWC2_Syntrophus__56_31 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
DEAD/DEAH box helicase
13_1_40cm_3_scaffold_542_24
unknown

Not on your lists

24679..25788
DNA (1110bp) protein (370aa)

This feature has no annotations

13_1_40cm_3_scaffold_542_25
CG_Arma_02, Armatimonadetes, Bacteria

Not on your lists

25866..26441
DNA (576bp) protein (192aa)
Raf kinase inhibitor-like protein, YbhB/YbcL family Tax=CG_Arma_02
Uncharacterized protein id=1973938 bin=GWE2_RBX1_39_32 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
phospholipid-binding protein, PBP family
13_1_40cm_3_scaffold_542_26
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

26938..28236
DNA (1299bp) protein (433aa)
gamma-glutamyltransferase; K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
ggt; gamma-glutamyltransferase; K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2] id=14631190 bin=bin9_gal15 species=Rhizobium sp. AP16 genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin9_gal15 organism_group=GAL15
gamma-glutamyltranspeptidase
Displaying 27 items

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