ggKbase home page

13_1_40cm_3_scaffold_25

Search features with annotation key words

Displaying items 1-30 of 75 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_25_1
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

1..756
DNA (756bp) protein (252aa)
Putative transposase, IS605 OrfB family n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IFZ7_NITGG
transposase, IS605 OrfB family
Putative transposase, IS605 OrfB family {ECO:0000313|EMBL:AFU60326.1}; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source=
13_1_40cm_3_scaffold_25_2
unknown

Not on your lists

911..1141
DNA (231bp) protein (77aa)

This feature has no annotations

13_1_40cm_3_scaffold_25_3
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1298..2602)
DNA (1305bp) protein (435aa)
Major facilitator transporter n=1 Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2B3T9_STRRD
major facilitator transporter
Major facilitator transporter {ECO:0000313|EMBL:ACZ89374.1}; TaxID=479432 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium r
13_1_40cm_3_scaffold_25_4
RBG_16_Euryarchaeota_62_10_curated, Euryarchaeota, Archaea

Not on your lists

2785..3471
DNA (687bp) protein (229aa)
Transcription regulator, arsR family n=1 Tax=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) RepID=C5A3A9_THEGJ
ArsR family transcriptional regulator Tax=RBG_16_Euryarchaeota_62_10_curated
Transcriptional regulator, ArsR family
13_1_40cm_3_scaffold_25_5
unknown

Not on your lists

comp(3479..4003)
DNA (525bp) protein (175aa)

This feature has no annotations

13_1_40cm_3_scaffold_25_6
Archaeoglobus profundus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

comp(4334..5683)
DNA (1350bp) protein (450aa)
CMP/dCMP deaminase zinc-binding protein n=1 Tax=Archaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 / Av18) RepID=D2RGN9_ARCPA
CMP/dCMP deaminase zinc-binding protein
CMP/dCMP deaminase zinc-binding protein {ECO:0000313|EMBL:ADB57464.1}; TaxID=572546 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;" source="Archaeogl
13_1_40cm_3_scaffold_25_7
unknown

Not on your lists

comp(5634..5855)
DNA (222bp) protein (74aa)

This feature has no annotations

13_1_40cm_3_scaffold_25_8
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

6250..7632
DNA (1383bp) protein (461aa)
glutamate synthase, central-C domain (EC:1.4.1.13)
Hypothetical conserved protein n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SQK7_9BACT id=1244817 bin=RBG9 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG9 organism_group=Chloroflexi
Uncharacterized protein {ECO:0000313|EMBL:KDA55006.1}; TaxID=1312852 species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
13_1_40cm_3_scaffold_25_9
RBG_16_KB1_OP1_55_9_curated, KB1, Bacteria

Not on your lists

7617..8903
DNA (1287bp) protein (429aa)
dao:Desac_1036 glutamate synthase (EC:1.4.1.13) id=1244816 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
glutamate synthase family protein Tax=RBG_16_KB1_OP1_55_9_curated
glutamate synthase family protein
13_1_40cm_3_scaffold_25_10

Not on your lists

8906..11488
DNA (2583bp) protein (861aa)
Putative uncharacterized protein n=1 Tax=uncultured archaeon GZfos14B8 RepID=Q64E42_9ARCH
Putative uncharacterized protein {ECO:0000313|EMBL:AAU82335.1}; TaxID=285396 species="Archaea; environmental samples.;" source="uncultured archaeon GZfos14B8.;"
glutamate synthase alpha subunit domain-containing protein
13_1_40cm_3_scaffold_25_11
unknown

Not on your lists

comp(11743..12054)
DNA (312bp) protein (104aa)

This feature has no annotations

13_1_40cm_3_scaffold_25_12
unknown

Not on your lists

12111..12491
DNA (381bp) protein (127aa)

This feature has no annotations

13_1_40cm_3_scaffold_25_13
unknown

Not on your lists

12695..13012
DNA (318bp) protein (106aa)

This feature has no annotations

13_1_40cm_3_scaffold_25_14
Thermaerobacter subterraneus, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13019..14245)
DNA (1227bp) protein (409aa)
Acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase n=1 Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6PNT1_9FIRM
Acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase {ECO:0000313|EMBL:EKP94532.1}; TaxID=867903 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Fam
peptidase M20
13_1_40cm_3_scaffold_25_15
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

14604..14777
DNA (174bp) protein (58aa)
hypothetical protein Tax=RBG_16_Euryarchaeota_68_13_curated
13_1_40cm_3_scaffold_25_16
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

14740..15603
DNA (864bp) protein (288aa)
hypothetical protein n=1 Tax=Streptomyces chartreusis RepID=UPI000262E4ED
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB49912.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woe
13_1_40cm_3_scaffold_25_17
RBG_16_Gammaproteobacteria_66_13_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15670..16083)
DNA (414bp) protein (138aa)
MUTT/NUDIX HYDROLASE id=5102312 bin=GWF1_WS6_37_7 species=WS6_GWF1_36_7 genus=WS6_GWF1_36_7 taxon_order=WS6_GWF1_36_7 taxon_class=WS6_GWF1_36_7 phylum=WS6 tax=GWF1_WS6_37_7 organism_group=WS6 (Doikabacteria)
Nudix 7..137 Tax=RBG_16_Gammaproteobacteria_66_13_curated
13_1_40cm_3_scaffold_25_18
Paenibacillus sp. HGF7, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

16192..16932
DNA (741bp) protein (247aa)
gph; phosphoglycolate phosphatase (EC:3.1.3.18)
HAD hydrolase, family IA, variant 1 n=2 Tax=Paenibacillus RepID=F5LT51_9BACL
HAD hydrolase, family IA, variant 1 {ECO:0000313|EMBL:EGL13392.1}; TaxID=944559 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. HGF7.;"
13_1_40cm_3_scaffold_25_19
unknown

Not on your lists

comp(16950..17267)
DNA (318bp) protein (106aa)

This feature has no annotations

13_1_40cm_3_scaffold_25_20
RBG_13_Bathyarchaeota_52_12_curated, Bathyarchaeota, Archaea

Not on your lists

comp(17362..17811)
DNA (450bp) protein (150aa)
Regulatory protein ArsR n=2 Tax=Archaea RepID=E6N342_9ARCH
regulatory protein, ArsR Tax=RBG_13_Bathyarchaeota_52_12_curated
regulatory protein, ArsR
13_1_40cm_3_scaffold_25_21
RBG_13_Chloroflexi_54_8_curated, Chloroflexi, Bacteria

Not on your lists

17938..19854
DNA (1917bp) protein (639aa)
hypothetical protein n=1 Tax=candidate division YNPFFA RepID=UPI00037D90BA rbh
hypothetical protein Tax=RBG_13_Chloroflexi_54_8_curated
hypothetical protein
13_1_40cm_3_scaffold_25_22
RBG_16_Bathyarchaeota_57_9_curated, Bathyarchaeota, Archaea

Not on your lists

comp(19861..20808)
DNA (948bp) protein (316aa)
Ribokinase n=1 Tax=Gordonia alkanivorans NBRC 16433 RepID=F9VYR0_9ACTO id=1242516 bin=RBG2 species=Gordonia alkanivorans genus=Gordonia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG2 organism_group=Chloroflexi
ribokinase Tax=RBG_16_Bathyarchaeota_57_9_curated
ribokinase
13_1_40cm_3_scaffold_25_23

Not on your lists

20965..21702
DNA (738bp) protein (246aa)
putative protease (EC:3.4.-.-)
Protease prsW n=1 Tax=Methanoculleus bourgensis (strain ATCC 43281 / DSM 3045 / OCM 15 / MS2) RepID=I7KDH3_METBM
Marine sediment metagenome DNA, contig: S03H2_S12091 {ECO:0000313|EMBL:GAH71665.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
13_1_40cm_3_scaffold_25_24
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(21727..22629)
DNA (903bp) protein (301aa)
Ribose-phosphate pyrophosphokinase n=1 Tax=Thermogladius cellulolyticus (strain 1633) RepID=I3TEM6_THEC1
ribose-phosphate pyrophosphokinase Tax=RBG_16_Archaea_50_20_curated
ribose-phosphate pyrophosphokinase
13_1_40cm_3_scaffold_25_25
unknown

Not on your lists

22906..23127
DNA (222bp) protein (74aa)

This feature has no annotations

13_1_40cm_3_scaffold_25_26
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23205..23855
DNA (651bp) protein (217aa)
Membrane-associated phospholipid phosphatase n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6T080_9CLOT
Membrane-associated phospholipid phosphatase {ECO:0000313|EMBL:EKQ52288.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium s
putative phosphatase
13_1_40cm_3_scaffold_25_27
Thermofilum pendens, Thermofilum, Thermoproteales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

23922..24692
DNA (771bp) protein (257aa)
Putative circadian clock protein, KaiC n=1 Tax=Thermofilum pendens (strain Hrk 5) RepID=A1S0H8_THEPD
putative circadian clock protein, KaiC
Putative circadian clock protein, KaiC {ECO:0000313|EMBL:ABL78958.1}; TaxID=368408 species="Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermofilaceae; Thermofilum.;" source="Thermofilum pe
13_1_40cm_3_scaffold_25_28
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

24774..25580
DNA (807bp) protein (269aa)
Uncharacterized protein n=1 Tax=Thermoplasmatales archaeon I-plasma RepID=T0LP14_9EURY
hypothetical protein Tax=RBG_16_Euryarchaeota_68_13_curated
hypothetical protein
13_1_40cm_3_scaffold_25_29
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(25594..25860)
DNA (267bp) protein (89aa)
Putative uncharacterized protein n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6PAL7_9ARCH
hypothetical protein
Putative uncharacterized protein Tax=RBG_16_Archaea_50_20_curated
13_1_40cm_3_scaffold_25_30
RBG_16_Bathyarchaeota_48_13_curated, Bathyarchaeota, Archaea

Not on your lists

comp(25872..29270)
DNA (3399bp) protein (1133aa)
DNA polymerase II large subunit (EC:2.7.7.7); K02322 DNA polymerase II large subunit [EC:2.7.7.7] Tax=RBG_16_Bathyarchaeota_48_13_curated
DNA polymerase II large subunit (EC:2.7.7.7)
DNA polymerase II large subunit n=1 Tax=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) RepID=DP2L_METTH
Displaying items 1-30 of 75 in total

View Taxonomy