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13_1_40cm_3_scaffold_3

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Displaying items 1-30 of 281 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_3_1
unknown

Not on your lists

comp(1..252)
DNA (252bp) protein (84aa)

This feature has no annotations

13_1_40cm_3_scaffold_3_2
Methanomethylovorans hollandica, Methanomethylovorans, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(660..1700)
DNA (1041bp) protein (347aa)
Phosphate uptake regulator n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KZ15_METHD
phosphate uptake regulator
Phosphate uptake regulator {ECO:0000313|EMBL:AGB49244.1}; TaxID=867904 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanomethylovorans.;" source="Methanom
13_1_40cm_3_scaffold_3_3
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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1983..3158
DNA (1176bp) protein (392aa)
ABC phosphate uptake transporter, substrate-binding protein n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IIL0_NITGG
pstS2; ABC phosphate uptake transporter, substrate-binding protein
ABC phosphate uptake transporter, substrate-binding protein {ECO:0000313|EMBL:AIC16348.1}; TaxID=926571 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitros
13_1_40cm_3_scaffold_3_4
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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3335..4309
DNA (975bp) protein (325aa)
ABC phosphate uptake transporter, substrate-binding protein n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IIL0_NITGG
pstS1; ABC phosphate uptake transporter, substrate-binding protein
ABC phosphate uptake transporter, substrate-binding protein {ECO:0000313|EMBL:AFU57922.1}; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitro
13_1_40cm_3_scaffold_3_5
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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4306..5232
DNA (927bp) protein (309aa)
Phosphate transport system permease protein pstA n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6AQS3_9ARCH
Phosphate transport system permease protein pstA {ECO:0000313|EMBL:CDI04987.1}; TaxID=1407055 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
pstA; Phosphate transport system permease protein PstA
13_1_40cm_3_scaffold_3_6
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

Not on your lists

5229..6068
DNA (840bp) protein (280aa)
pstB; ABC phosphate uptake transporter, ATP-binding protein (EC:3.6.3.27) Tax=RBG_16_Thaumarchaeota_49_8_curated
pstB; ABC phosphate uptake transporter, ATP-binding protein (EC:3.6.3.27)
ABC phosphate uptake transporter, ATP-binding protein n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IMI6_NITGG
13_1_40cm_3_scaffold_3_7
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

Not on your lists

6084..6719
DNA (636bp) protein (212aa)
Phosphate-specific transport system accessory protein PhoU n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0I9B5_NITGG
phosphate uptake regulator, PhoU Tax=RBG_16_Thaumarchaeota_49_8_curated
phosphate uptake regulator, PhoU
13_1_40cm_3_scaffold_3_8
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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7561..9279
DNA (1719bp) protein (573aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI000375277A
binding-protein-dependent transport system inner membrane protein; K02063 thiamine transport system permease protein Tax=RBG_16_Euryarchaeota_68_12_curated
Molybdenum transport system permease protein ModB
13_1_40cm_3_scaffold_3_9
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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9289..10383
DNA (1095bp) protein (365aa)
malK9; trehalose/maltose import ATP-binding protein MalK (EC:3.6.3.19)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00036ECF18 rbh
ABC transporter, ATP-binding protein Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_3_scaffold_3_10
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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10389..11483
DNA (1095bp) protein (365aa)
ABC-type spermidine/putrescine transport systems, ATPase component (EC:3.6.3.31) Tax=RBG_16_Euryarchaeota_68_12_curated
ABC-type spermidine/putrescine transport systems, ATPase component (EC:3.6.3.31)
ABC-type spermidine/putrescine transport systems, ATPase component n=1 Tax=Thermoplasmatales archaeon BRNA1 RepID=M4YN61_9EURY rbh
13_1_40cm_3_scaffold_3_11
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

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11476..12147
DNA (672bp) protein (224aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI000382CEDA
hypothetical protein; K07220 hypothetical protein Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
Phosphate transport regulator
13_1_40cm_3_scaffold_3_12
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

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12166..12789
DNA (624bp) protein (208aa)
Putative uncharacterized protein n=1 Tax=Methanoregula boonei (strain 6A8) RepID=A7I6C0_METB6
hypothetical protein; K07220 hypothetical protein Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
hypothetical protein
13_1_40cm_3_scaffold_3_13
unknown

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comp(13068..13292)
DNA (225bp) protein (75aa)

This feature has no annotations

13_1_40cm_3_scaffold_3_14
unknown

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comp(13326..14123)
DNA (798bp) protein (266aa)

This feature has no annotations

13_1_40cm_3_scaffold_3_15
unknown

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15038..15358
DNA (321bp) protein (107aa)

This feature has no annotations

13_1_40cm_3_scaffold_3_16
RBG_16_Archaea_50_20_curated, Archaea

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15907..16230
DNA (324bp) protein (108aa)
DNA-directed RNA polymerase subunit n=1 Tax=Thermococcus litoralis DSM 5473 RepID=H3ZPL5_THELI
DNA-directed RNA polymerase subunit M Tax=RBG_16_Archaea_50_20_curated
DNA-directed RNA polymerase subunit M
13_1_40cm_3_scaffold_3_17
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

16235..17038
DNA (804bp) protein (268aa)
proliferating cell nuclear antigen PcnA; K04802 proliferating cell nuclear antigen Tax=RBG_16_Archaea_50_20_curated
pcn; proliferating cell nuclear antigen
proliferating cell nuclear antigen PcnA id=14428073 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
13_1_40cm_3_scaffold_3_18
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

17046..18101
DNA (1056bp) protein (352aa)
priB; DNA primase, large subunit; K02685 DNA primase large subunit [EC:2.7.7.-] Tax=RBG_16_Archaea_50_20_curated
DNA primase large subunit PriL n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I855_METCZ
priB; DNA primase, large subunit
13_1_40cm_3_scaffold_3_19
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

18088..19302
DNA (1215bp) protein (405aa)
putative DNA primase, small subunit; K02683 DNA primase [EC:2.7.7.-] Tax=RBG_16_Archaea_50_20_curated
DNA primase small subunit (EC:2.7.7.-)
DNA primase small subunit PriS n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N7C9_9ARCH
13_1_40cm_3_scaffold_3_20
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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19383..19949
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6AVL3_9ARCH
hypothetical protein Tax=RBG_13_Bathyarchaeota_46_16b_curated
hypothetical protein
13_1_40cm_3_scaffold_3_21
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

20278..20469
DNA (192bp) protein (64aa)
30S ribosomal protein S27e n=1 Tax=Korarchaeum cryptofilum (strain OPF8) RepID=B1L751_KORCO
rps27e; 30S ribosomal protein S27e; K02978 small subunit ribosomal protein S27e Tax=RBG_16_Archaea_50_20_curated
30S ribosomal protein S27E
13_1_40cm_3_scaffold_3_22
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

20483..21274
DNA (792bp) protein (264aa)
Translation initiation factor 2 subunit alpha n=1 Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=IF2A_METKA
translation initiation factor 2, subunit alpha; K03237 translation initiation factor 2 subunit 1 Tax=RBG_16_Archaea_50_20_curated
SUI2; translation initiation factor IF-2 subunit alpha
13_1_40cm_3_scaffold_3_23
RBG_16_Archaea_50_20_curated, Archaea

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comp(21441..24002)
DNA (2562bp) protein (854aa)
Putative uncharacterized protein n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N5Y4_9ARCH
hypothetical protein Tax=RBG_16_Archaea_50_20_curated
hypothetical protein
13_1_40cm_3_scaffold_3_24
CG_Caldi_01, Caldisericum, Caldisericales, Caldisericia, Caldiserica, Bacteria

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comp(24595..25626)
DNA (1032bp) protein (344aa)
Uncharacterized protein n=1 Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) RepID=D1Z0B0_METPS
nitrogenase subunit NifH (ATPase)-like protein Tax=CG_Caldi_01
hypothetical protein
13_1_40cm_3_scaffold_3_25
unknown

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comp(25630..25845)
DNA (216bp) protein (72aa)

This feature has no annotations

13_1_40cm_3_scaffold_3_26
GWB1_OP11_38_5_partial, Woesebacteria, Microgenomates, Bacteria

Not on your lists

25868..26509
DNA (642bp) protein (214aa)
plcN; non-hemolytic phospholipase C (EC:3.1.4.3)
Phospholipase C n=1 Tax=Pseudogulbenkiania ferrooxidans EGD-HP2 RepID=U1AJ99_9NEIS
Uncharacterized protein {ECO:0000313|EMBL:KKQ75743.1}; TaxID=1618569 species="Bacteria; Microgenomates.;" source="Microgenomates (Woesebacteria) bacterium GW2011_GWB1_38_5b.;"
13_1_40cm_3_scaffold_3_27
GWB2_Deltaproteobacteria_55_19_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27093..29102
DNA (2010bp) protein (670aa)
hypothetical protein n=1 Tax=Glaciibacter superstes RepID=UPI0003B48462
PKD domain-containing protein Tax=GWB2_Deltaproteobacteria_55_19_curated
extracellular nuclease
13_1_40cm_3_scaffold_3_28
RBG_16_Archaea_50_20_curated, Archaea

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29231..30115
DNA (885bp) protein (295aa)
Arginase n=1 Tax=Acetonema longum DSM 6540 RepID=F7NKJ1_9FIRM
arginase Tax=RBG_16_Archaea_50_20_curated
arginase
13_1_40cm_3_scaffold_3_29
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(30195..30659)
DNA (465bp) protein (155aa)
Putative uncharacterized protein n=1 Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D4G5_METSW
Putative ester cyclase {ECO:0000313|EMBL:KCZ70593.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" s
hypothetical protein
13_1_40cm_3_scaffold_3_30
unknown

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comp(30757..30912)
DNA (156bp) protein (52aa)

This feature has no annotations

Displaying items 1-30 of 281 in total

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