ggKbase home page

13_1_40cm_4_scaffold_1049

Search features with annotation key words

Displaying items 1-30 of 56 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_1049_1
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

146..682
DNA (537bp) protein (179aa)
Tax=RBG_13_Bathyarchaeota_38_9_curated
13_1_40cm_4_scaffold_1049_2
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

861..1856
DNA (996bp) protein (332aa)
Putative uncharacterized protein n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N8P6_9ARCH
NurA domain-containing protein Tax=RBG_13_Bathyarchaeota_38_9_curated
hypothetical protein
13_1_40cm_4_scaffold_1049_3
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

1857..3281
DNA (1425bp) protein (475aa)
hypothetical protein Tax=RBG_13_Bathyarchaeota_38_9_curated
DUF87 domain-containing protein id=2756267 bin=GWC2_CP_Nitrospirae-rel_42_7 species=Candidatus Nitrososphaera gargensis genus=Nitrososphaera taxon_order=Nitrososphaerales taxon_class=unknown phylum=Thaumarchaeota tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
hypothetical protein
13_1_40cm_4_scaffold_1049_4
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(3364..4929)
DNA (1566bp) protein (522aa)
Putative cysteine synthase n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0I761_NITGG
cysteine synthase
Cysteine synthase {ECO:0000313|EMBL:AIF82707.1}; TaxID=1459636 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososph
13_1_40cm_4_scaffold_1049_5
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

4988..5365
DNA (378bp) protein (126aa)
Putative uncharacterized protein n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DII7_9EURY
Putative uncharacterized protein Tax=RBG_16_Archaea_50_20_curated
13_1_40cm_4_scaffold_1049_6
Candidatus Nitrosoarchaeum koreensis, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

5619..6284
DNA (666bp) protein (222aa)
Oxidoreductase FAD/NAD(P)-binding domain protein n=1 Tax=Candidatus Nitrosoarchaeum koreensis MY1 RepID=F9CU77_9ARCH
Oxidoreductase FAD/NAD(P)-binding domain protein {ECO:0000313|EMBL:EGP94278.1}; TaxID=1001994 species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" sourc
oxidoreductase FAD/NAD(P)-binding subunit
13_1_40cm_4_scaffold_1049_7
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

6626..6898
DNA (273bp) protein (91aa)
Hypothetical membrane protein Tax=RBG_16_Euryarchaeota_41_19_curated
13_1_40cm_4_scaffold_1049_8
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

7064..8164
DNA (1101bp) protein (367aa)
hypothetical protein n=2 Tax=unclassified Crenarchaeota RepID=UPI00038245FD
glycosyl transferase family 2 protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
family 2 glycosyl transferase
13_1_40cm_4_scaffold_1049_9
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

8203..9786
DNA (1584bp) protein (528aa)
ELP3; RNA polymerase II complex ELP3 subunit; K07739 elongator complex protein 3 [EC:2.3.1.48] Tax=RBG_13_Bathyarchaeota_46_16b_curated
Histone acetyltransferase, ELP3 family n=1 Tax=Candidatus Nitrosoarchaeum koreensis MY1 RepID=F9CVM7_9ARCH
ELP3; RNA polymerase II complex ELP3 subunit
13_1_40cm_4_scaffold_1049_10
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

9842..11176
DNA (1335bp) protein (445aa)
glutamyl-tRNA(Gln) amidotransferase subunit D; K09482 glutamyl-tRNA(Gln) amidotransferase subunit D [EC:6.3.5.7] Tax=RBG_13_Bathyarchaeota_46_16b_curated
hypothetical protein n=1 Tax=Aigarchaeota archaeon JGI 0000001-H6 RepID=UPI0003673AA1
glutamyl-tRNA(Gln) amidotransferase subunit D
13_1_40cm_4_scaffold_1049_11
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

11492..13081
DNA (1590bp) protein (530aa)
Glutamyl-tRNA(Gln) amidotransferase subunit E n=1 Tax=Thermofilum sp. 1910b RepID=S5ZD67_9CREN
glutamyl-tRNA(Gln) amidotransferase Tax=RBG_13_Bathyarchaeota_38_9_curated
glutamyl-tRNA(Gln) amidotransferase
13_1_40cm_4_scaffold_1049_12

Not on your lists

13078..13557
DNA (480bp) protein (160aa)
AsnC family transcriptional regulator n=1 Tax=Nitrosopumilus sp. SJ RepID=UPI00037E27C7
Marine sediment metagenome DNA, contig: S01H1_L05582 {ECO:0000313|EMBL:GAF82676.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
putative HTH-type transcriptional regulator
13_1_40cm_4_scaffold_1049_13
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

Not on your lists

comp(13554..14393)
DNA (840bp) protein (280aa)
trpA; tryptophan synthase subunit alpha (EC:4.2.1.20) Tax=RBG_16_Thaumarchaeota_49_8_curated
trpA; tryptophan synthase subunit alpha (EC:4.2.1.20)
Tryptophan synthase alpha chain n=1 Tax=Methanofollis liminatans DSM 4140 RepID=J0RWZ0_9EURY
13_1_40cm_4_scaffold_1049_14
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

comp(14371..15474)
DNA (1104bp) protein (368aa)
trpB; tryptophan synthase subunit beta (EC:4.1.2.20) Tax=RBG_13_Bathyarchaeota_38_9_curated
trpB; tryptophan synthase subunit beta (EC:4.1.2.20)
Tryptophan synthase beta chain n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IBB0_NITGG
13_1_40cm_4_scaffold_1049_15
Candidatus Nitrosopumilus koreensis, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(15570..16346)
DNA (777bp) protein (259aa)
Indole-3-glycerol-phosphate synthase n=1 Tax=Candidatus Nitrosopumilus koreensis AR1 RepID=K0B7L4_9ARCH
indole-3-glycerol phosphate synthase
Indole-3-glycerol-phosphate synthase {ECO:0000313|EMBL:AFS80915.1}; TaxID=1229908 species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopum
13_1_40cm_4_scaffold_1049_16
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(16352..17401)
DNA (1050bp) protein (350aa)
trpGD; bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase (EC:4.1.3.27); K13497 anthranilate synthase/phosphoribosyltransferase [EC:4.1.3.27 2.4.2.18] Tax=RBG_16_Archaea_50
Anthranilate phosphoribosyltransferase n=1 Tax=Methanotorris igneus (strain DSM 5666 / JCM 11834 / Kol 5) RepID=F6BD09_METIK
anthranilate phosphoribosyltransferase
13_1_40cm_4_scaffold_1049_17
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(17407..17985)
DNA (579bp) protein (193aa)
trpG; anthranilate synthase component II (EC:4.1.3.27)
Anthranilate synthase component II {ECO:0000313|EMBL:AFU58604.1}; EC=4.1.3.27 {ECO:0000313|EMBL:AFU58604.1};; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitros
Anthranilate synthase component II n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IN19_NITGG
13_1_40cm_4_scaffold_1049_18
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(17982..19169)
DNA (1188bp) protein (396aa)
trpE; anthranilate synthase component 1 (EC:4.1.3.27) Tax=RBG_16_Archaea_50_20_curated
trpE; anthranilate synthase component 1 (EC:4.1.3.27)
Anthranilate synthase component 1 n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IBR4_NITGG
13_1_40cm_4_scaffold_1049_19
Ignicoccus hospitalis, Ignicoccus, Desulfurococcales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

comp(19426..20511)
DNA (1086bp) protein (362aa)
Chorismate mutase n=1 Tax=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) RepID=A8AAX2_IGNH4
chorismate mutase
Chorismate mutase {ECO:0000313|EMBL:ABU82074.1}; TaxID=453591 species="Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales; Desulfurococcaceae; Ignicoccus.;" source="Ignicoccus hospitalis (strain
13_1_40cm_4_scaffold_1049_20
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(20518..21618)
DNA (1101bp) protein (367aa)
chorismate synthase (EC:4.2.3.5)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU0
Chorismate synthase n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IFH5_NITGG
13_1_40cm_4_scaffold_1049_21
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(21608..22882)
DNA (1275bp) protein (425aa)
3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19); K00800 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] Tax=RBG_16_Archaea_50_20_curated
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Alistipes sp. CAG:157 RepID=R5WTH3_9BACT
3-phosphoshikimate 1-carboxyvinyltransferase
13_1_40cm_4_scaffold_1049_22
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(22879..23751)
DNA (873bp) protein (291aa)
shikimate kinase (EC:2.7.1.71); K00891 shikimate kinase [EC:2.7.1.71] Tax=RBG_16_Archaea_50_20_curated
Shikimate kinase n=1 Tax=Methanocaldococcus sp. (strain FS406-22) RepID=D3S8E1_METSF
shikimate kinase
13_1_40cm_4_scaffold_1049_23
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(23748..24473)
DNA (726bp) protein (242aa)
shikimate 5-dehydrogenase; K00014 shikimate dehydrogenase [EC:1.1.1.25] Tax=RBG_16_Archaea_50_20_curated
shikimate dehydrogenase (EC:1.1.1.25)
Shikimate dehydrogenase n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GWT7_METFV
13_1_40cm_4_scaffold_1049_24
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

comp(24591..25274)
DNA (684bp) protein (228aa)
aroD; 3-dehydroquinate dehydratase, type I; K03785 3-dehydroquinate dehydratase I [EC:4.2.1.10] Tax=RBG_13_Bathyarchaeota_38_9_curated
3-dehydroquinate dehydratase (EC:4.2.1.10)
3-dehydroquinate dehydratase n=1 Tax=Desulfobulbus propionicus (strain ATCC 33891 / DSM 2032 / 1pr3) RepID=E8RJ52_DESPD
13_1_40cm_4_scaffold_1049_25
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(25271..26317)
DNA (1047bp) protein (349aa)
3-dehydroquinate synthase; K11646 dehydroquinate synthase II [EC:1.4.1.-] Tax=RBG_16_Archaea_50_20_curated
aroB; 3-dehydroquinate synthase (EC:1.4.1.-)
3-dehydroquinate synthase n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8IAN9_METCZ
13_1_40cm_4_scaffold_1049_26
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(26292..27044)
DNA (753bp) protein (251aa)
fructose bisphosphate aldolase; K01623 fructose-bisphosphate aldolase, class I [EC:4.1.2.13] Tax=RBG_16_Archaea_50_20_curated
fructose-bisphosphate aldolase (EC:4.1.2.13)
2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase n=1 Tax=Methanosphaera stadtmanae (strain ATCC 43021 / DSM 3091 / JCM 11832 / MCB-3) RepID=Q2NHZ5_METST
13_1_40cm_4_scaffold_1049_27
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(27115..28164)
DNA (1050bp) protein (350aa)
Asd; aspartate-semialdehyde dehydrogenase (EC:1.2.1.11); K00133 aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] Tax=RBG_16_Archaea_50_20_curated
Asd; aspartate-semialdehyde dehydrogenase (EC:1.2.1.11)
Aspartate-semialdehyde dehydrogenase n=1 Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=Q8TVK0_METKA
13_1_40cm_4_scaffold_1049_28
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

comp(28166..29512)
DNA (1347bp) protein (449aa)
aspartate kinase (EC:2.7.2.4); K00928 aspartate kinase [EC:2.7.2.4] Tax=RBG_13_Bathyarchaeota_38_9_curated
lysC; aspartate kinase (EC:2.7.2.4)
Aspartokinase n=1 Tax=Methanothermobacter marburgensis (strain DSM 2133 / 14651 / NBRC 100331 / OCM 82 / Marburg) RepID=D9PX40_METTM
13_1_40cm_4_scaffold_1049_29
unknown

Not on your lists

comp(29660..30178)
DNA (519bp) protein (173aa)

This feature has no annotations

13_1_40cm_4_scaffold_1049_30
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

30533..32368
DNA (1836bp) protein (612aa)
GlmS; glucosamine 6-phosphate synthetase; K00820 glucosamine--fructose-6-phosphate aminotransferase (isomerizing) [EC:2.6.1.16] Tax=RBG_16_Archaea_50_20_curated
glucosamine--fructose-6-phosphate aminotransferase (isomerizing) (EC:2.6.1.16)
hypothetical protein n=1 Tax=Crenarchaeota archaeon SCGC AAA471-B05 RepID=UPI00036C48FC
Displaying items 1-30 of 56 in total

View Taxonomy