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13_1_40cm_4_scaffold_1211

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_1211_1
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

1..900
DNA (900bp) protein (300aa)
Elongation factor Tu n=2 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LHU1_CHLTF
tuf; elongation factor Tu; K02358 elongation factor Tu Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
tuf; elongation factor Tu
13_1_40cm_4_scaffold_1211_2
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists


927..1076
DNA (150bp) protein (50aa)
50S ribosomal protein L33; K02913 large subunit ribosomal protein L33 Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
50S ribosomal protein L33; K02913 large subunit ribosomal protein L33 id=17522682 bin=RBG_16_Aminicenantes_63_14 species=Hippea maritima genus=Hippea taxon_order=Desulfurellales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_16_Aminicenantes_63_14 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
50S ribosomal protein L33
13_1_40cm_4_scaffold_1211_trna_1
unknown

Not on your lists

1119..1190
DNA (72bp)
transferRNA
13_1_40cm_4_scaffold_1211_3
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

1272..1550
DNA (279bp) protein (93aa)
Protein translocase subunit SecE n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IHG8_KORVE
preprotein translocase, SecE subunit; K03073 preprotein translocase subunit SecE Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
protein translocation complex subunit SecE
13_1_40cm_4_scaffold_1211_4
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

1567..2100
DNA (534bp) protein (178aa)
Transcription termination/antitermination protein NusG n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IHG9_KORVE
transcription antitermination protein nusG; K02601 transcriptional antiterminator NusG Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
transcription antitermination protein nusG
13_1_40cm_4_scaffold_1211_5
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists


2172..2603
DNA (432bp) protein (144aa)
rplK; 50S ribosomal protein L11 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
50S ribosomal protein L11; K02867 large subunit ribosomal protein L11 id=12555599 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rplK; 50S ribosomal protein L11
13_1_40cm_4_scaffold_1211_6
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists


2637..3347
DNA (711bp) protein (237aa)
50S ribosomal protein L1 n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=RL1_SOLUE
rplA; 50S ribosomal protein L1; K02863 large subunit ribosomal protein L1 Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
rplA; 50S ribosomal protein L1
13_1_40cm_4_scaffold_1211_7
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists


3377..3943
DNA (567bp) protein (189aa)
50S ribosomal protein L10 n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01VA9_SOLUE
rplJ; 50S ribosomal protein L10; K02864 large subunit ribosomal protein L10 Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
rplJ; 50S ribosomal protein L10
13_1_40cm_4_scaffold_1211_8
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

3980..4360
DNA (381bp) protein (127aa)
50S ribosomal protein L7 n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037693CE
50S ribosomal protein L7/L12; K02935 large subunit ribosomal protein L7/L12 Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
rplL; 50S ribosomal protein L7/L12
13_1_40cm_4_scaffold_1211_9
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

4592..9025
DNA (4434bp) protein (1478aa)
DNA-directed RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01321};; RNA polymerase su
DNA-directed RNA polymerase subunit beta n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=RPOB_KORVE
rpoB; DNA-directed RNA polymerase subunit beta
13_1_40cm_4_scaffold_1211_10
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

10268..12739
DNA (2472bp) protein (824aa)
DNA-directed RNA polymerase, subunit beta-prime; K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
rpoC; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta'''' n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI0003788123
13_1_40cm_4_scaffold_1211_11
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

Not on your lists

12751..13335
DNA (585bp) protein (195aa)
DNA-directed RNA polymerase, subunit beta-prime; K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
DNA-directed RNA polymerase subunit beta-prime n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=UPI0000D76CD4
DNA-directed RNA polymerase subunit beta-prime
13_1_40cm_4_scaffold_1211_12
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

13518..16202
DNA (2685bp) protein (895aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacte
Signal transduction histidine kinase, nitrogen specific, NtrB n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IQS3_KORVE
signal transduction histidine kinase, nitrogen specific, NtrB
13_1_40cm_4_scaffold_1211_13
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(16272..17282)
DNA (1011bp) protein (337aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IKE1_KORVE
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
hypothetical protein
13_1_40cm_4_scaffold_1211_14
unknown

Not on your lists

comp(17450..17668)
DNA (219bp) protein (73aa)

This feature has no annotations

13_1_40cm_4_scaffold_1211_15
unknown

Not on your lists

comp(17903..18481)
DNA (579bp) protein (193aa)

This feature has no annotations

13_1_40cm_4_scaffold_1211_16
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(18468..19907)
DNA (1440bp) protein (480aa)
gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curat
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=GATA_KORVE
gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A
13_1_40cm_4_scaffold_1211_17
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(19968..20270)
DNA (303bp) protein (101aa)
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C (EC:6.3.5.-); K02435 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPHIGHO2_01_FULL_Acidobac
glutamyl-tRNA(Gln) amidotransferase subunit C; K02435 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] id=14426607 bin=bin1_lowGC species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=bin1_lowGC organism_group=Unknown_CP
aspartyl/glutamyl-tRNA amidotransferase subunit C
13_1_40cm_4_scaffold_1211_18
unknown

Not on your lists

comp(20267..20905)
DNA (639bp) protein (213aa)

This feature has no annotations

13_1_40cm_4_scaffold_1211_19
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(20930..22216)
DNA (1287bp) protein (429aa)
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; K03526 (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
gcpE; 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase; K03526 (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1] id=12554811 bin=CNBR_ACIDO species=unknown genus=Methylovorus taxon_order=Methylophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC:1.17.7.1)
13_1_40cm_4_scaffold_1211_20
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(22328..23782)
DNA (1455bp) protein (485aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI00036863FB
putative plasma glutamate carboxypeptidase
Putative plasma glutamate carboxypeptidase {ECO:0000313|EMBL:AIE86524.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="
13_1_40cm_4_scaffold_1211_21
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(23911..24222)
DNA (312bp) protein (104aa)
metal dependent phosphohydrolase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
Putative hydrolase id=3965461 bin=GWF2_Ignavibacteria_35_20 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
hydrolase
Displaying 22 items

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