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13_1_40cm_4_scaffold_13464

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_13464_1
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(2..379)
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=planctomycete KSU-1 RepID=I3ILY2_9PLAN
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hypothetical protein
13_1_40cm_4_scaffold_13464_2
unknown

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comp(579..1547)
DNA (969bp) protein (323aa)

This feature has no annotations

13_1_40cm_4_scaffold_13464_3
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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1771..2262
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Actinomadura madurae LIID-AJ290 RepID=U2PKY6_9ACTO
two-component histidine kinase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
ATP-binding region ATPase domain protein
13_1_40cm_4_scaffold_13464_4
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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2259..2942
DNA (684bp) protein (228aa)
OmpR family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8B6_GEMAT
response regulator receiver
Response regulator receiver {ECO:0000313|EMBL:AHG87878.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_13464_5
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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2946..3683
DNA (738bp) protein (246aa)
hypothetical protein n=1 Tax=Balneola vulgaris RepID=UPI0003797C25
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG89050.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_13464_6
unknown

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3683..4423
DNA (741bp) protein (247aa)

This feature has no annotations

13_1_40cm_4_scaffold_13464_7
CG_Delta_02, Deltaproteobacteria, Proteobacteria, Bacteria

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4439..5341
DNA (903bp) protein (301aa)
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; K12251 N-carbamoylputrescine amidase [EC:3.5.1.53] Tax=CG_Delta_02
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase id=2854538 bin=GWC2_Deltaproteobacteria_66_88 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Deltaproteobacteria_66_88 organism_group=Deltaproteobacteria
hydrolase
13_1_40cm_4_scaffold_13464_8
GWA2_Deltaproteobacteria_65_63_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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5378..6016
DNA (639bp) protein (213aa)
peptidylarginine deiminase-like protein (EC:3.5.3.12); K10536 agmatine deiminase [EC:3.5.3.12] Tax=GWA2_Deltaproteobacteria_65_63_curated
Peptidylarginine deiminase-like enzyme id=2854540 bin=GWC2_Deltaproteobacteria_66_88 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Deltaproteobacteria_66_88 organism_group=Deltaproteobacteria
peptidyl-arginine deiminase family protein
13_1_40cm_4_scaffold_13464_9
RBG_16_Deltaproteobacteria_58_17_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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6013..6387
DNA (375bp) protein (125aa)
peptidylarginine deiminase-like protein (EC:3.5.3.12); K10536 agmatine deiminase [EC:3.5.3.12] Tax=RBG_16_Deltaproteobacteria_58_17_curated
Agmatine deiminase id=3982000 bin=GWC2_Syntrophobacterales_56_13 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
aguA; agmatine deiminase
13_1_40cm_4_scaffold_13464_10
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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6446..6838
DNA (393bp) protein (131aa)
methylmalonyl-CoA epimerase; K05606 methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] Tax=RBG_16_Gemmatimonadetes_66_8_curated
YraH id=3964376 bin=GWC2_Ignavibacteria_56_12 species=Bacillus sp. NRRL B-14911 genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
methylmalonyl-CoA epimerase
13_1_40cm_4_scaffold_13464_11
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6907..8217
DNA (1311bp) protein (437aa)
ABC transporter substrate-binding protein n=1 Tax=Streptomyces violaceoniger RepID=UPI0003C77354
ABC transporter substrate-binding protein
Peptide ABC transporter substrate-binding protein {ECO:0000313|EMBL:KFF76619.1}; TaxID=615 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" so
13_1_40cm_4_scaffold_13464_12
unknown

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8214..8381
DNA (168bp) protein (56aa)

This feature has no annotations

13_1_40cm_4_scaffold_13464_13
Anaeromyxobacter dehalogenans, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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8393..9850
DNA (1458bp) protein (486aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=290397 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cy
Periplasmic sensor signal transduction histidine kinase n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Q2IEU8_ANADE
periplasmic sensor signal transduction histidine kinase
13_1_40cm_4_scaffold_13464_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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9853..11193
DNA (1341bp) protein (447aa)
Two component, sigma54 specific, transcriptional regulator, Fis family id=2085290 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Fis family transcriptional regulator; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX Tax=GWA2_Rokubacteria_73_35_curated
sigma-54-dependent transcriptional response regulator
13_1_40cm_4_scaffold_13464_15
Oscillatoria acuminata, Oscillatoria, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

11396..12163
DNA (768bp) protein (256aa)
Flp pilus assembly protein TadD n=1 Tax=Oscillatoria acuminata PCC 6304 RepID=K9TMQ9_9CYAN
Flp pilus assembly protein TadD {ECO:0000313|EMBL:AFY84157.1}; Flags: Precursor;; TaxID=56110 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Oscillatoria.;" source="Oscillat
TPR repeat-containing protein
13_1_40cm_4_scaffold_13464_16
Anaeromyxobacter sp. PSR-1, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12147..12368)
DNA (222bp) protein (74aa)
Major facilitator superfamily transporter n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Q2IGP4_ANADE
Protein spinster {ECO:0000313|EMBL:GAO03023.1}; TaxID=1300915 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source=
major facilitator superfamily protein
13_1_40cm_4_scaffold_13464_17
unknown

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12370..13449
DNA (1080bp) protein (360aa)

This feature has no annotations

13_1_40cm_4_scaffold_13464_18
Hymenobacter swuensis, Hymenobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(13359..14780)
DNA (1422bp) protein (474aa)
hypothetical protein n=1 Tax=Hymenobacter aerophilus RepID=UPI00036AF32A
Putative dipeptidyl peptidase IV
Putative dipeptidyl peptidase IV {ECO:0000313|EMBL:AHJ95689.1}; TaxID=1227739 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Hymenobacter.;" source="Hymenobacter swuensis D
13_1_40cm_4_scaffold_13464_19
RIFOXYC2_FULL_Ignavibacteria_38_25_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(14777..15292)
DNA (516bp) protein (172aa)
dipeptidyl-peptidase IV (EC:3.4.14.5); K01278 dipeptidyl-peptidase 4 [EC:3.4.14.5] Tax=RIFOXYC2_FULL_Ignavibacteria_38_25_curated
dipeptidyl-peptidase IV
Dipeptidyl aminopeptidase id=4068325 bin=GWF2_Melioribacter_38_21 species=Fulvivirga imtechensis genus=Fulvivirga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Melioribacter_38_21 organism_group=Ignavibacteria
13_1_40cm_4_scaffold_13464_20
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(15613..16395)
DNA (783bp) protein (261aa)
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
hypothetical protein
13_1_40cm_4_scaffold_13464_21
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

16593..16964
DNA (372bp) protein (124aa)
PEP phosphonomutase-like protein id=14626847 bin=bin7_NC10_sister species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
PEP phosphonomutase-like protein Tax=CSP1_6_Rokubacteria
hypothetical protein
Displaying 21 items

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