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13_1_40cm_4_scaffold_1355

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_1355_1
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(17..1189)
DNA (1173bp) protein (391aa)
UPF0272 protein Moth_2512 n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Y2512_MOOTA id=5223158 bin=16ft_combo_ws3_JS1 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
TIGR00299 family protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
UPF0272 protein
13_1_40cm_4_scaffold_1355_2
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(1217..2299)
DNA (1083bp) protein (361aa)
threonine synthase; K01733 threonine synthase [EC:4.2.3.1] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Putative threonine synthase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8T1_GEMAT
threonine synthase
13_1_40cm_4_scaffold_1355_3
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(2368..4176)
DNA (1809bp) protein (603aa)
UvrABC system protein C n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=UVRC_GEMAT
uvrC; UvrABC system protein C; K03703 excinuclease ABC subunit C Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
uvrC; UvrABC system protein C
13_1_40cm_4_scaffold_1355_4
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(4143..5645)
DNA (1503bp) protein (501aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8S9_GEMAT
hypothetical protein
Putative lipid II flippase MurJ {ECO:0000256|PIRNR:PIRNR002869}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca
13_1_40cm_4_scaffold_1355_5
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(5642..5914)
DNA (273bp) protein (91aa)
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_40cm_4_scaffold_1355_6
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(5925..7361)
DNA (1437bp) protein (479aa)
UPF0747 protein n=2 Tax=Bacteria RepID=E7C456_9BACT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
protein of unknown function UCP012535
13_1_40cm_4_scaffold_1355_7
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(7358..8077)
DNA (720bp) protein (240aa)
Methyltransferase type 11 n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XQ79_9BACT
methyltransferase Tax=GWC2_Gemmatimonadetes_71_10_curated
SAM-dependent methyltransferase
13_1_40cm_4_scaffold_1355_8
Spirochaeta thermophila, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(8074..8493)
DNA (420bp) protein (140aa)
AMMECR1-domain protein n=1 Tax=Spirochaeta thermophila (strain ATCC 700085 / DSM 6578 / Z-1203) RepID=G0GDX4_SPITZ
AMMECR1-domain-containing protein
AMMECR1-domain protein {ECO:0000313|EMBL:AEJ60606.1}; TaxID=869211 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta thermophila (strain ATCC 700085
13_1_40cm_4_scaffold_1355_9

Not on your lists

comp(8627..9046)
DNA (420bp) protein (140aa)
Methyltransferase {ECO:0000313|EMBL:EQD61208.1}; EC=2.1.1.- {ECO:0000313|EMBL:EQD61208.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage m
Methyltransferase n=2 Tax=mine drainage metagenome RepID=T1AXY6_9ZZZZ
hypothetical protein
13_1_40cm_4_scaffold_1355_10
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(9046..10335)
DNA (1290bp) protein (430aa)
glutamate dehydrogenase; K00261 glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] Tax=GWC2_Gemmatimonadetes_71_10_curated
Glutamate dehydrogenase n=1 Tax=Acidobacterium sp. (strain MP5ACTX9) RepID=E8X074_ACISM
Glu/Leu/Phe/Val dehydrogenase
13_1_40cm_4_scaffold_1355_11
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(10332..11348)
DNA (1017bp) protein (339aa)
lpxK; tetraacyldisaccharide 4'-kinase (EC:2.7.1.130); K00912 tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Tetraacyldisaccharide 4'-kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8S5_GEMAT
Tetraacyldisaccharide 4'-kinase
13_1_40cm_4_scaffold_1355_12
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(11360..11986)
DNA (627bp) protein (209aa)
Uncharacterized protein conserved in bacteria n=2 Tax=Bacteria RepID=E7C459_9BACT
hypothetical protein; K09778 hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
protein of unknown function DUF374
13_1_40cm_4_scaffold_1355_13
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(11983..13086)
DNA (1104bp) protein (368aa)
lpxB; lipid-A-disaccharide synthase (EC:2.4.1.182); K00748 lipid-A-disaccharide synthase [EC:2.4.1.182] Tax=GWC2_Gemmatimonadetes_71_10_curated
lpxB; lipid-A-disaccharide synthase (EC:2.4.1.182)
Lipid-A-disaccharide synthase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8S3_GEMAT
13_1_40cm_4_scaffold_1355_14
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(13083..14066)
DNA (984bp) protein (328aa)
Putative oxidoreductase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8S2_GEMAT
putative oxidoreductase
Putative oxidoreductase {ECO:0000313|EMBL:BAH38632.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-
13_1_40cm_4_scaffold_1355_15
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(14063..14830)
DNA (768bp) protein (256aa)
lpxA; acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase (EC:2.3.1.129)
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase {ECO:0000256|SAAS:SAAS00064156}; EC=2.3.1.129 {ECO:0000256|SAAS:SAAS00001267};; TaxID=379066 species="Bacteria; Gemmatimonadetes;
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8S1_GEMAT
13_1_40cm_4_scaffold_1355_16
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(14827..15270)
DNA (444bp) protein (148aa)
lpxC/fabZ; bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-ACP dehydratase (EC:3.5.1.- 4.2.1.-); K02372 3R-hydroxymyristoyl ACP dehydrase [EC:4.2.1.-];
lpxC_fabZ; bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-ACP dehydratase (EC:3.5.1.- 4.2.1.-)
UDP-3-O-acyl-N-acetylglucosamine deacetylase n=1 Tax=uncultured Gemmatimonadales bacterium HF0500_22O06 RepID=E7C5E3_9BACT
13_1_40cm_4_scaffold_1355_17
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(15317..15949)
DNA (633bp) protein (211aa)
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ {ECO:0000256|SAAS:SAAS00064869}; EC=3.5.1.- {ECO:0000256|SAAS:SAAS00041386};; EC=4.2.1.59 {ECO:0000256|SAAS:SAAS00064862};; UDP-3-O-[3-hydroxymyri
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8S0_GEMAT
(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase
13_1_40cm_4_scaffold_1355_18
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(16050..17117)
DNA (1068bp) protein (356aa)
UDP-3-O-acylglucosamine N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_00523}; EC=2.3.1.- {ECO:0000256|HAMAP-Rule:MF_00523};; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes
UDP-3-O-acylglucosamine N-acyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8R9_GEMAT
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
13_1_40cm_4_scaffold_1355_19
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(17140..17712)
DNA (573bp) protein (191aa)
Putative uncharacterized protein n=1 Tax=uncultured Gemmatimonadales bacterium HF0500_22O06 RepID=E7C5E1_9BACT
outer membrane chaperone skp (omph); K06142 outer membrane protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
outer membrane chaperone Skp (OmpH)
13_1_40cm_4_scaffold_1355_20
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(17758..20160)
DNA (2403bp) protein (801aa)
Bacterial surface antigen (D15) family protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8R7_GEMAT
surface antigen; K07277 outer membrane protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
outer membrane protein assembly complex, YaeT protein
13_1_40cm_4_scaffold_1355_21
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(20157..20789)
DNA (633bp) protein (211aa)
ATP-dependent Clp protease ATP-binding subunit ClpC n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8R6_GEMAT
clpC; ATP-dependent Clp protease ATP-binding subunit ClpC; K03696 ATP-dependent Clp protease ATP-binding subunit ClpC Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
clpC; ATP-dependent Clp protease ATP-binding subunit ClpC
Displaying 21 items

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