ggKbase home page

13_1_40cm_4_scaffold_13644

Search features with annotation key words

Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_13644_1
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(3..554)
DNA (552bp) protein (184aa)
Transcriptional regulatory protein pilR n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBD7_9BACT
pilR; transcriptional regulatory protein pilR
Transcriptional regulatory protein pilR {ECO:0000313|EMBL:CBK40546.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.
13_1_40cm_4_scaffold_13644_2
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(554..1894)
DNA (1341bp) protein (447aa)
putative sensor protein PilS (EC:2.7.13.3)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121, ECO:0000313|EMBL:CBK40545.1};; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae;
Putative Sensor protein PilS n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBD6_9BACT
13_1_40cm_4_scaffold_13644_3
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(2210..2662)
DNA (453bp) protein (151aa)
pilC; type IV pilus biogenesis protein PilC; K02653 type IV pilus assembly protein PilC Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
Type IV pilus inner membrane protein PilC id=4139318 bin=GWC2_Nitrospirae_57_13 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
type II secretion system protein
13_1_40cm_4_scaffold_13644_4
unknown

Not on your lists

2698..2871
DNA (174bp) protein (58aa)

This feature has no annotations

13_1_40cm_4_scaffold_13644_5
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists

comp(3374..5212)
DNA (1839bp) protein (613aa)
type iv-a pilus assembly atpase pilb; K02652 type IV pilus assembly protein PilB Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
Type IV-A pilus assembly ATPase PilB id=3721000 bin=GWF2_Nitrospirae_44_13 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
type IV-A pilus assembly ATPase PilB
13_1_40cm_4_scaffold_13644_6
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(5353..5889)
DNA (537bp) protein (179aa)
pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5); K00995 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] Tax=RIFCSPLOWO2_02_FULL_Ni
pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5)
CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBD3_9BACT
13_1_40cm_4_scaffold_13644_7
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

6056..6256
DNA (201bp) protein (67aa)
Putative Thiamine biosynthesis protein ThiS n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PE92_9BACT
putative thiamine biosynthesis protein ThiS; K03154 sulfur carrier protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
putative thiamine biosynthesis protein ThiS
13_1_40cm_4_scaffold_13644_8
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

6257..7183
DNA (927bp) protein (309aa)
cysK; cysteine synthase (EC:2.5.1.47); K01738 cysteine synthase A [EC:2.5.1.47] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
cysK; cysteine synthase (EC:2.5.1.47)
Cysteine synthase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PE91_9BACT
13_1_40cm_4_scaffold_13644_9
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

7185..8003
DNA (819bp) protein (273aa)
thiF; adenylyltransferase ThiF (EC:2.7.7.-)
Adenylyltransferase ThiF {ECO:0000313|EMBL:CBK41549.1}; EC=2.7.7.- {ECO:0000313|EMBL:CBK41549.1};; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Can
adenylyltransferase n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=UPI0001C2B10F
13_1_40cm_4_scaffold_13644_10
RBG_19FT_COMBO_Nitrospirae_42_15_curated, Nitrospirae, Bacteria

Not on your lists

8006..8911
DNA (906bp) protein (302aa)
thrC1; threonine synthase (EC:4.2.3.1); K01733 threonine synthase [EC:4.2.3.1] Tax=RBG_19FT_COMBO_Nitrospirae_42_15_curated
thrC1; threonine synthase (EC:4.2.3.1)
threonine synthase n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=UPI0001C2B110
Displaying 10 items

View Taxonomy