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13_1_40cm_4_scaffold_1409

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_1409_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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70..939
DNA (870bp) protein (290aa)
two component, sigma54 specific, Fis family transcriptional regulator; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_
Two component, sigma54 specific, transcriptional regulator, Fis family id=2085290 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sigma-54-dependent transcriptional response regulator
13_1_40cm_4_scaffold_1409_2
R_NC10_66_22, NC10, Bacteria

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936..1292
DNA (357bp) protein (119aa)
Histidine kinase (EC:2.7.13.3) Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
Histidine kinase (EC:2.7.13.3)
Multi-sensor hybrid histidine kinase id=3222448 bin=GWC2_Methylomirabilis_70_16 species=Herpetosiphon aurantiacus genus=Herpetosiphon taxon_order=Herpetosiphonales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_1409_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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1301..2794
DNA (1494bp) protein (498aa)
protein FdrA; K02381 FdrA protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative oxidoreductase subunit id=2085289 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
FdrA family protein
13_1_40cm_4_scaffold_1409_4
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2860..3681)
DNA (822bp) protein (274aa)
Alpha/beta hydrolase fold protein n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G738_GEOUR
alpha/beta hydrolase fold protein
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:ABQ27606.1}; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter
13_1_40cm_4_scaffold_1409_5
Bradyrhizobium sp. ORS 285, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3815..4813)
DNA (999bp) protein (333aa)
Putative ATP-dependent DNA ligase {ECO:0000313|EMBL:CCD85799.1}; EC=6.5.1.1 {ECO:0000313|EMBL:CCD85799.1};; TaxID=115808 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizo
ligC; ATP-dependent DNA ligase (EC:6.5.1.1)
Putative ATP-dependent DNA ligase n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0RV22_9BRAD
13_1_40cm_4_scaffold_1409_6
R_Acidobacteria_65_29, Acidobacteria, Bacteria

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comp(4992..5990)
DNA (999bp) protein (333aa)
hypothetical protein; K01971 DNA ligase (ATP) [EC:6.5.1.1] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01WD4_SOLUE
hypothetical protein
13_1_40cm_4_scaffold_1409_7
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

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comp(5990..6511)
DNA (522bp) protein (174aa)
Putative uncharacterized protein n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HAH3_ANADF
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
hypothetical protein
13_1_40cm_4_scaffold_1409_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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6651..8021
DNA (1371bp) protein (457aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
Putative uncharacterized protein id=2085282 bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_1409_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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8018..8953
DNA (936bp) protein (312aa)
carbamate kinase (EC:2.7.2.2); K00926 carbamate kinase [EC:2.7.2.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
carbamate kinase (EC:2.7.2.2)
Carbamate kinase id=4792718 bin=GWC2_Methylomirabilis_70_16 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_1409_10
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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8970..9716
DNA (747bp) protein (249aa)
fabG; 3-oxoacyl-ACP reductase (EC:1.1.1.100)
3-oxoacyl-[acyl-carrier-protein] reductase n=1 Tax=Desmospora sp. 8437 RepID=F5SCR5_9BACL
Uncharacterized protein {ECO:0000313|EMBL:ETW98717.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
13_1_40cm_4_scaffold_1409_11
BJP_IG2069_Desfulfarculales_53_13, Desulfarculales, Deltaproteobacteria, Proteobacteria, Bacteria

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9734..10240
DNA (507bp) protein (169aa)
endoribonuclease; K07567 TdcF protein id=1246927 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
Tax=BJP_IG2069_Desfulfarculales_53_13
13_1_40cm_4_scaffold_1409_12
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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10268..10489
DNA (222bp) protein (74aa)
id=3767291 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
id=3767291 Tax=GWC2_Rokubacteria_70_16_curated
13_1_40cm_4_scaffold_1409_13
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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10486..10854
DNA (369bp) protein (123aa)
Putative uncharacterized protein Tax=GWA2_Rokubacteria_70_23_curated
Putative uncharacterized protein id=3859478 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1409_14
Jonquetella anthropi, Jonquetella, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

10851..11567
DNA (717bp) protein (239aa)
hydantoin racemase (EC:5.1.99.-)
Hydantoin racemase n=1 Tax=Jonquetella anthropi DSM 22815 RepID=H0UIF3_9BACT
Hydantoin racemase {ECO:0000313|EMBL:EHM12661.1}; TaxID=885272 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Jonquetella.;" source="Jonquetella anthropi DSM 22815.;"
13_1_40cm_4_scaffold_1409_15
Mycobacterium mageritense, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11567..12151
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) RepID=A0QWJ9_MYCS2
Glycine cleavage system protein T (Aminomethyltransferase) {ECO:0000313|EMBL:CDO26302.1}; TaxID=53462 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="M
Urea carboxylase-related aminomethyltransferase
13_1_40cm_4_scaffold_1409_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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12229..13257
DNA (1029bp) protein (343aa)
Extracellular solute-binding protein family 1 id=4534452 bin=GWF2_Methylomirabilis_70_14 species=Xanthobacter autotrophicus genus=Xanthobacter taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
extracellular solute-binding protein; K02055 putative spermidine/putrescine transport system substrate-binding protein Tax=GWA2_Rokubacteria_73_35_curated
extracellular solute-binding protein
13_1_40cm_4_scaffold_1409_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

13254..14048
DNA (795bp) protein (265aa)
ABC-type spermidine/putrescine transport system, permease component I id=4975509 bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobium sp. YR681 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
binding-protein-dependent transport system inner membrane protein; K02054 putative spermidine/putrescine transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
binding-protein-dependent transport systems inner membrane component
13_1_40cm_4_scaffold_1409_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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14045..14830
DNA (786bp) protein (262aa)
Binding--dependent transport system inner membrane component family protein id=4975510 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
binding-protein-dependent transport system inner membrane protein; K02053 putative spermidine/putrescine transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
binding-protein-dependent transport system inner membrane protein
13_1_40cm_4_scaffold_1409_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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14827..15873
DNA (1047bp) protein (349aa)
ABC transporter ATP-binding protein; K02052 putative spermidine/putrescine transport system ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Sulfate/thiosulfate import ATP-binding protein CysA 2 id=4975511 bin=GWA2_Methylomirabilis_73_35 species=Streptomyces sp. Mg1 genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
spermidine/putrescine ABC transporter ATPase
13_1_40cm_4_scaffold_1409_20
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

15935..16465
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Caldicellulosiruptor obsidiansis (strain ATCC BAA-2073 / strain OB47) RepID=D9THI2_CALOO
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hypothetical protein
13_1_40cm_4_scaffold_1409_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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16462..17577
DNA (1116bp) protein (372aa)
Amidohydrolase id=2085174 bin=GWA2_Methylomirabilis_73_35 species=Enterococcus faecalis genus=Enterococcus taxon_order=Lactobacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
amidohydrolase family protein Tax=GWA2_Rokubacteria_73_35_curated
amidohydrolase 3
13_1_40cm_4_scaffold_1409_22
unknown

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comp(17681..17848)
DNA (168bp) protein (56aa)

This feature has no annotations

13_1_40cm_4_scaffold_1409_23
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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17947..18300
DNA (354bp) protein (118aa)
hypothetical protein RTW15_08591 id=4646426 bin=GWA2_Methylomirabilis_73_35 species=Ruegeria conchae genus=Ruegeria taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_4_scaffold_1409_24
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

18436..18999
DNA (564bp) protein (188aa)
PyrR; bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase (EC:2.4.2.9); K02825 pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] Tax=RI
pyrR; bifunctional pyrimidine operon regulatory protein/uracil phosphoribosyltransferase (EC:2.4.2.9)
Bifunctional protein PyrR id=4792710 bin=GWC2_Methylomirabilis_70_16 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_1409_25
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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19049..19990
DNA (942bp) protein (314aa)
pyrB; aspartate carbamoyltransferase (catalytic subunit) (EC:2.1.3.2) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
pyrB; aspartate carbamoyltransferase (catalytic subunit) (EC:2.1.3.2) id=14625173 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
pyrB; aspartate carbamoyltransferase (catalytic subunit) (EC:2.1.3.2)
13_1_40cm_4_scaffold_1409_26
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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19987..21261
DNA (1275bp) protein (425aa)
pyrC; dihydroorotase (EC:3.5.2.3); K01465 dihydroorotase [EC:3.5.2.3] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
pyrC; dihydroorotase (EC:3.5.2.3)
Dihydroorotase id=4530400 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1409_27
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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21258..22349
DNA (1092bp) protein (364aa)
carA; carbamoyl phosphate synthetase, glutamine amidotransferase small subunit (EC:6.3.5.5) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
carA; carbamoyl phosphate synthetase, glutamine amidotransferase small subunit (EC:6.3.5.5) id=14625175 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
carA; carbamoyl phosphate synthase small subunit
13_1_40cm_4_scaffold_1409_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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22366..22632
DNA (267bp) protein (89aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=3102576 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_1409_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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22637..25177
DNA (2541bp) protein (847aa)
carB; carbamoyl phosphate synthase, large subunit (EC:6.3.5.5) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
carB; carbamoyl phosphate synthase, large subunit (EC:6.3.5.5) id=14625178 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
carbamoyl-phosphate synthase large subunit
13_1_40cm_4_scaffold_1409_30
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

25131..25751
DNA (621bp) protein (207aa)
carB; carbamoyl phosphate synthase, large subunit (EC:6.3.5.5) Tax=GWA2_Rokubacteria_73_35_curated
Carbamoyl-phosphate synthase large chain id=4815543 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
carbamoyl-phosphate synthase, large subunit
Displaying items 1-30 of 40 in total

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