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13_1_40cm_4_scaffold_15523

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_15523_1
unknown

Not on your lists

2..127
DNA (126bp) protein (42aa)

This feature has no annotations

13_1_40cm_4_scaffold_15523_2
unknown

Not on your lists

141..311
DNA (171bp) protein (57aa)

This feature has no annotations

13_1_40cm_4_scaffold_15523_3
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(320..1234)
DNA (915bp) protein (305aa)
transcriptional regulator, LysR family protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C47B2
Transcriptional regulator {ECO:0000313|EMBL:CDM66657.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
LysR family transcriptional regulator
13_1_40cm_4_scaffold_15523_4
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

1377..1694
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XEL9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF61733.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedo
13_1_40cm_4_scaffold_15523_5
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

1672..2028
DNA (357bp) protein (119aa)
transcriptional modulator of MazE/toxin MazF; K07171 mRNA interferase [EC:3.1.-.-] Tax=GWF2_Verrucomicrobia_62_7_curated
Transcriptional modulator of MazE/toxin, MazF n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XEM0_9BACT
transcriptional modulator of MazE/toxin MazF
13_1_40cm_4_scaffold_15523_6
Thermodesulfovibrio yellowstonii, Thermodesulfovibrio, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

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2129..4303
DNA (2175bp) protein (725aa)
Type I site-specific deoxyribonuclease n=1 Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=B5YGZ8_THEYD
type I site-specific deoxyribonuclease
Type I site-specific deoxyribonuclease {ECO:0000313|EMBL:ACI22167.1}; TaxID=289376 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Thermodesulfovibrio.;" source="Thermodesulfovibrio yel
13_1_40cm_4_scaffold_15523_7
unknown

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comp(4269..4811)
DNA (543bp) protein (181aa)

This feature has no annotations

13_1_40cm_4_scaffold_15523_8

Not on your lists

4816..6312
DNA (1497bp) protein (499aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1Z170_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD38438.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
transcriptional regulator
13_1_40cm_4_scaffold_15523_9
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

6309..6470
DNA (162bp) protein (54aa)
type III restriction enzyme, res subunit; K01153 type I restriction enzyme, R subunit [EC:3.1.21.3] Tax=GWF2_Verrucomicrobia_62_7_curated
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000372F1C4
helicase, type I site-specific restriction-modification system restriction subunit
13_1_40cm_4_scaffold_15523_10
RLO_PLX_64_10, Bacteria

Not on your lists

6467..6988
DNA (522bp) protein (174aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
id=1938459 bin=GWD2_Nitrospirae-related_57_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
hypothetical protein
13_1_40cm_4_scaffold_15523_11
RLO_PLX_64_10, Bacteria

Not on your lists

6985..7188
DNA (204bp) protein (68aa)
hypothetical protein VspiD_05425 Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
hypothetical protein VspiD_05425 id=1938455 bin=GWD2_Nitrospirae-related_57_8 species=Verrucomicrobium spinosum genus=Verrucomicrobium taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
13_1_40cm_4_scaffold_15523_12
Methanosarcina barkeri, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

7185..8489
DNA (1305bp) protein (435aa)
Type I restriction-modification system, specificity subunit S {ECO:0000313|EMBL:AKB50712.1}; EC=3.1.21.3 {ECO:0000313|EMBL:AKB50712.1};; TaxID=1434109 species="Archaea; Euryarchaeota; Methanomicrobia;
Type I restriction-modification system specificity subunit n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q466N9_METBF
type I restriction-modification system specificity subunit
13_1_40cm_4_scaffold_15523_13
Methanoplanus limicola, Methanoplanus, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

8563..9309
DNA (747bp) protein (249aa)
Putative uncharacterized protein n=1 Tax=Methanoplanus limicola DSM 2279 RepID=H1YYK5_9EURY
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ35988.1}; TaxID=937775 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae; Methanoplanus.;" source="Methano
13_1_40cm_4_scaffold_15523_14
unknown

Not on your lists

9306..9578
DNA (273bp) protein (91aa)

This feature has no annotations

13_1_40cm_4_scaffold_15523_15
unknown

Not on your lists

9578..10219
DNA (642bp) protein (214aa)

This feature has no annotations

13_1_40cm_4_scaffold_15523_16
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

10231..11160
DNA (930bp) protein (310aa)
hsdM-2; type I restriction modification system, methyltransferase subunit (EC:2.1.1.72); K03427 type I restriction enzyme M protein [EC:2.1.1.72] Tax=GWF2_Verrucomicrobia_62_7_curated
DNA methyltransferase n=1 Tax=Rudaea cellulosilytica RepID=UPI000363D1BD
hypothetical protein
13_1_40cm_4_scaffold_15523_17
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11076..11480)
DNA (405bp) protein (135aa)
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
13_1_40cm_4_scaffold_15523_18
unknown

Not on your lists

comp(11580..12137)
DNA (558bp) protein (186aa)

This feature has no annotations

13_1_40cm_4_scaffold_15523_19
unknown

Not on your lists

comp(12098..12574)
DNA (477bp) protein (159aa)

This feature has no annotations

13_1_40cm_4_scaffold_15523_20
Bacteroides thetaiotaomicron, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12985..13527)
DNA (543bp) protein (181aa)
Peptide methionine sulfoxide reductase msrA/msrB n=1 Tax=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) RepID=Q8A4U8_BACTN
bifunctional methionine sulfoxide reductase A/B
Peptide methionine sulfoxide reductase msrA/msrB {ECO:0000313|EMBL:AAO77606.1}; TaxID=226186 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacter
13_1_40cm_4_scaffold_15523_21
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

13984..14664
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAS6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY16486.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
13_1_40cm_4_scaffold_15523_22
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

15079..15888
DNA (810bp) protein (270aa)
ubiE3; ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC:2.1.1.-)
Ubiquinone/menaquinone biosynthesis methyltransferase UbiE n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3XAK9_RHIFR
ubiquinone/menaquinone biosynthesis methyltransferase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
13_1_40cm_4_scaffold_15523_23
unknown

Not on your lists

comp(16064..16438)
DNA (375bp) protein (125aa)

This feature has no annotations

13_1_40cm_4_scaffold_15523_24
unknown

Not on your lists

16476..17120
DNA (645bp) protein (215aa)
ankyrin
Displaying 24 items

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