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13_1_40cm_4_scaffold_1697

Search features with annotation key words

Displaying items 1-30 of 63 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_1697_1
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..857)
DNA (855bp) protein (285aa)
Amidohydrolase n=1 Tax=Prochloron didemni P1-Palau RepID=G0XS52_PRODI
TIM-barrel fold metal-dependent hydrolase Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
amidohydrolase 2
13_1_40cm_4_scaffold_1697_2
Ralstonia sp. PBA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(874..1974)
DNA (1101bp) protein (367aa)
muconate and chloromuconate cycloisomerase (EC:5.5.1.1)
Mandelate racemase/muconate lactonizing protein n=1 Tax=Ralstonia sp. PBA RepID=I9W3B8_9RALS
Mandelate racemase/muconate lactonizing protein {ECO:0000313|EMBL:EIZ02937.1}; TaxID=795666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" sourc
13_1_40cm_4_scaffold_1697_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2030..2950)
DNA (921bp) protein (307aa)
RpoD subfamily RNA polymerase sigma-70 subunit; K03086 RNA polymerase primary sigma factor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
RNA polymerase sigma factor id=4853978 bin=GWA2_Methylomirabilis_73_35 species=Selenomonas noxia genus=Selenomonas taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sigma-70 family RNA polymerase sigma factor
13_1_40cm_4_scaffold_1697_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2943..3752)
DNA (810bp) protein (270aa)
peptidase M23B Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NlpD; membrane protein id=14626518 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
peptidase M23
13_1_40cm_4_scaffold_1697_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(3749..3934)
DNA (186bp) protein (62aa)
acylphosphatase; K01512 acylphosphatase [EC:3.6.1.7] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
acylphosphatase; K01512 acylphosphatase [EC:3.6.1.7]
Acylphosphatase id=4853977 bin=GWA2_Methylomirabilis_73_35 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1697_trna_2
unknown

Not on your lists

comp(4071..4144)
DNA (74bp)
transferRNA
13_1_40cm_4_scaffold_1697_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4172..4828)
DNA (657bp) protein (219aa)
protein-L-isoaspartate O-methyltransferase; K00573 protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Protein-L-isoaspartate O-methyltransferase 1 id=4853976 bin=GWA2_Methylomirabilis_73_35 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
protein-L-isoaspartate O-methyltransferase
13_1_40cm_4_scaffold_1697_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4828..5643)
DNA (816bp) protein (272aa)
surE; stationary phase survival protein SurE; K03787 5'-nucleotidase [EC:3.1.3.5] Tax=GWA2_Rokubacteria_73_35_curated
surE; stationary phase survival protein SurE (EC:3.1.3.5)
5'-nucleotidase SurE id=4853975 bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1697_trna_1
unknown

Not on your lists

comp(5659..5732)
DNA (74bp)
transferRNA
13_1_40cm_4_scaffold_1697_8
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(5772..6125)
DNA (354bp) protein (118aa)
Regulatory protein MerR id=4717252 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
regulatory protein MerR Tax=GWA2_Rokubacteria_70_23_curated
regulatory protein MerR
13_1_40cm_4_scaffold_1697_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6122..6403)
DNA (282bp) protein (94aa)
histone family protein DNA-binding protein; K04764 integration host factor subunit alpha Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Integration host factor, alpha subunit id=4853973 bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ihfA-1; integration host factor subunit alpha
13_1_40cm_4_scaffold_1697_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(6462..7451)
DNA (990bp) protein (330aa)
uncharacterized LOC100215998 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Blr0521 protein id=4853972 bin=GWA2_Methylomirabilis_73_35 species=Tropheryma whipplei genus=Tropheryma taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
proline/alanine-rich repetetive membrane anchored protein
13_1_40cm_4_scaffold_1697_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7448..8362)
DNA (915bp) protein (305aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=4853971 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_1697_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8359..9705)
DNA (1347bp) protein (449aa)
engA; GTP-binding protein EngA; K03977 GTP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
GTPase Der id=4853970 bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
small GTP-binding protein domain-containing protein
13_1_40cm_4_scaffold_1697_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9749..10729)
DNA (981bp) protein (327aa)
PDZ domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4853969 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Desulforudis audaxviator genus=Candidatus Desulforudis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_1697_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10975..11508)
DNA (534bp) protein (178aa)
pgsA_2; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase id=4853968 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1697_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11517..12812)
DNA (1296bp) protein (432aa)
GTP-binding protein HflX; K03665 GTP-binding protein HflX Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
GTPase HflX id=4853967 bin=GWA2_Methylomirabilis_73_35 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
HSR1-like GTP-binding protein
13_1_40cm_4_scaffold_1697_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12809..13750)
DNA (942bp) protein (314aa)
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase (EC:2.5.1.75); K00791 tRNA dimethylallyltransferase [EC:2.5.1.75] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
tRNA delta(2)-isopentenylpyrophosphate transferase (EC:2.5.1.75)
tRNA dimethylallyltransferase id=4853966 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1697_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(13836..15164)
DNA (1329bp) protein (443aa)
mutL; DNA mismatch repair protein; K03572 DNA mismatch repair protein MutL Tax=GWA2_Rokubacteria_73_35_curated
DNA mismatch repair protein MutL id=4853965 bin=GWA2_Methylomirabilis_73_35 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hexB; DNA mismatch repair protein HexB
13_1_40cm_4_scaffold_1697_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15482..18115)
DNA (2634bp) protein (878aa)
mutS; DNA mismatch repair protein MutS; K03555 DNA mismatch repair protein MutS Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
DNA mismatch repair protein MutS id=4430853 bin=GWC2_Methylomirabilis_70_24 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
DNA mismatch repair protein MutS
13_1_40cm_4_scaffold_1697_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18135..18590)
DNA (456bp) protein (152aa)
histidine triad (HIT) protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Histidine triad (HIT) protein id=3360718 bin=GWA2_Methylomirabilis_73_35 species=Thermococcus sp. CL1 genus=Thermococcus taxon_order=Thermococcales taxon_class=Thermococci phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
histidine triad (HIT) protein
13_1_40cm_4_scaffold_1697_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18634..18909)
DNA (276bp) protein (92aa)
hupA1; DNA-binding protein HU 1; K05788 integration host factor subunit beta Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Integration host factor, beta subunit, putative id=3360720 bin=GWA2_Methylomirabilis_73_35 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hupA1; DNA-binding protein HU 1
13_1_40cm_4_scaffold_1697_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(19194..20111)
DNA (918bp) protein (306aa)
peptidase S49, putative signal peptide peptidase SppA (EC:3.4.21.-); K04773 protease IV [EC:3.4.21.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
peptidase S49, putative signal peptide peptidase SppA (EC:3.4.21.-); K04773 protease IV [EC:3.4.21.-] id=14627235 bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
Signal peptide peptidase SppA, 36K type (EC:3.1.3.26)
13_1_40cm_4_scaffold_1697_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(20080..21801)
DNA (1722bp) protein (574aa)
rpsA; 30S ribosomal protein S1 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
30S ribosomal protein S1 id=4941223 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
rpsA; 30S ribosomal protein S1
13_1_40cm_4_scaffold_1697_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(21824..23164)
DNA (1341bp) protein (447aa)
cytidylate kinase; K00945 cytidylate kinase [EC:2.7.4.14] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
cytidylate kinase, partial n=1 Tax=Candidatus Latescibacter anaerobius SCGC AAA252-E07 RepID=UPI0003B4DB15
cytidylate kinase
13_1_40cm_4_scaffold_1697_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(23182..24495)
DNA (1314bp) protein (438aa)
3-phosphoshikimate 1-carboxyvinyltransferase; K00800 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
aroA; 3-phosphoshikimate 1-carboxyvinyltransferase AroA (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase id=4941220 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Desulforudis audaxviator genus=Candidatus Desulforudis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_1697_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(24492..25967)
DNA (1476bp) protein (492aa)
prephenate dehydrogenase (EC:1.3.1.12); K04517 prephenate dehydrogenase [EC:1.3.1.12] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
prephenate dehydrogenase (EC:1.3.1.12)
Prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase family protein id=4143295 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1697_26
unknown

Not on your lists

26222..26341
DNA (120bp) protein (40aa)

This feature has no annotations

13_1_40cm_4_scaffold_1697_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(26406..27467)
DNA (1062bp) protein (354aa)
pheA; chorismate mutase/prephenate dehydratase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Chorismate mutase/prephenate dehydratase id=3333763 bin=GWA2_Methylomirabilis_73_35 species=Azoarcus sp. KH32C genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
prephenate dehydratase
13_1_40cm_4_scaffold_1697_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(27496..28032)
DNA (537bp) protein (179aa)
pseudouridine synthase; K06178 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
rluB; pseudouridine synthase (EC:5.4.99.-)
Pseudouridine synthase id=3333767 bin=GWA2_Methylomirabilis_73_35 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Displaying items 1-30 of 63 in total

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