ggKbase home page

13_1_40cm_4_scaffold_247

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_247_1
unknown

Not on your lists

114..470
DNA (357bp) protein (119aa)

This feature has no annotations

13_1_40cm_4_scaffold_247_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(467..712)
DNA (246bp) protein (82aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_4_scaffold_247_3
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

831..1364
DNA (534bp) protein (178aa)
fatty acid desaturase n=1 Tax=Ancylobacter sp. FA202 RepID=UPI000363F4B1
Fatty acid desaturase {ECO:0000313|EMBL:EWY39730.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibi
fatty acid desaturase
13_1_40cm_4_scaffold_247_4
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1373..1786
DNA (414bp) protein (138aa)
Beta-carotene ketolase n=1 Tax=Methylophaga nitratireducenticrescens (strain ATCC BAA-2433 / DSM 25689 / JAM1) RepID=I1XH11_METNJ
Fatty acid desaturase {ECO:0000313|EMBL:KGF69655.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
beta-carotene ketolase
13_1_40cm_4_scaffold_247_5
unknown

Not on your lists

comp(1806..2615)
DNA (810bp) protein (270aa)

This feature has no annotations

13_1_40cm_4_scaffold_247_6
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

2788..3288
DNA (501bp) protein (167aa)
Clp amino terminal domain-containing protein {ECO:0000313|EMBL:CDM67061.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphat
13_1_40cm_4_scaffold_247_7
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(3349..3855)
DNA (507bp) protein (169aa)
Hypothetical membrane protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6T8_GEMAT
protein of unknown function DUF456
Uncharacterized protein {ECO:0000313|EMBL:AHG92231.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_247_8
unknown

Not on your lists

3882..4367
DNA (486bp) protein (162aa)

This feature has no annotations

13_1_40cm_4_scaffold_247_9
RBG_16_Aminicenantes_63_16_curated, Aminicenantes, Bacteria

Not on your lists

4430..5062
DNA (633bp) protein (211aa)
hypothetical protein n=1 Tax=Geopsychrobacter electrodiphilus RepID=UPI00035CFD38
Marine sediment metagenome DNA, contig: S01H4_L05693 Tax=RBG_16_Aminicenantes_63_16_curated
13_1_40cm_4_scaffold_247_10
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5078..5980)
DNA (903bp) protein (301aa)
Aldo/keto reductase n=1 Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1ADD1_THECD
aldo/keto reductase
Aldo/keto reductase {ECO:0000313|EMBL:ACY95641.1}; TaxID=471852 species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain
13_1_40cm_4_scaffold_247_11
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

6033..6449
DNA (417bp) protein (139aa)
Putative pilin n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9W7_GEMAT
putative pilin
Putative pilin {ECO:0000313|EMBL:AHG88689.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_247_12
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(6456..6764)
DNA (309bp) protein (103aa)
Heavy-metal resistance protein
Heavy-metal resistance protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Putative uncharacterized protein id=4419195 bin=GWF2_Lentisphaerae_50_93 species=Microscilla marina genus=Microscilla taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
13_1_40cm_4_scaffold_247_13
unknown

Not on your lists

comp(6893..7240)
DNA (348bp) protein (116aa)

This feature has no annotations

13_1_40cm_4_scaffold_247_14
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(7237..7752)
DNA (516bp) protein (172aa)
RNA polymerase sigma factor, sigma-70 family
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
RNA polymerase sigma factor id=3395044 bin=GWF2_Lentisphaerae_49_21 species=Microscilla marina genus=Microscilla taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
13_1_40cm_4_scaffold_247_15
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(7868..8539)
DNA (672bp) protein (224aa)
Putative TonB protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A976_GEMAT
tonB; putative TonB protein; K03832 periplasmic protein TonB Tax=RBG_16_Gemmatimonadetes_66_8_curated
tonB; putative TonB protein
13_1_40cm_4_scaffold_247_16
unknown

Not on your lists

comp(8546..8752)
DNA (207bp) protein (69aa)

This feature has no annotations

13_1_40cm_4_scaffold_247_17
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8887..10434)
DNA (1548bp) protein (516aa)
Probable DNA ligase {ECO:0000255|HAMAP-Rule:MF_00407}; EC=6.5.1.1 {ECO:0000255|HAMAP-Rule:MF_00407};; Polydeoxyribonucleotide synthase [ATP] {ECO:0000255|HAMAP-Rule:MF_00407}; TaxID=404589 species="Ba
Probable DNA ligase n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=DNLI_ANADF
ligB; ATP-dependent DNA ligase
13_1_40cm_4_scaffold_247_18
unknown

Not on your lists

comp(10539..10964)
DNA (426bp) protein (142aa)

This feature has no annotations

13_1_40cm_4_scaffold_247_19
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(11021..11545)
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ADU5_GEMAT
DinB-like domain protein
DinB-like domain protein {ECO:0000313|EMBL:AHG88227.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_247_20
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(11545..13797)
DNA (2253bp) protein (751aa)
protein kinase
Protein kinase {ECO:0000313|EMBL:AHG92755.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Serine/threonine protein kinase id=1250165 bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
13_1_40cm_4_scaffold_247_21
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

13857..15215
DNA (1359bp) protein (453aa)
Amidohydrolase n=1 Tax=Pontibacter sp. BAB1700 RepID=J1FF68_9BACT
amidohydrolase Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
amidohydrolase
13_1_40cm_4_scaffold_247_22
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15239..16126
DNA (888bp) protein (296aa)
Putative oxidoreductase protein n=1 Tax=Azospirillum brasilense Sp245 RepID=G8B0Y0_AZOBR
Aldo/keto reductase {ECO:0000313|EMBL:KGM34838.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus M
aldo/keto reductase
13_1_40cm_4_scaffold_247_23
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16126..16791
DNA (666bp) protein (222aa)
Permease of the major facilitator superfamily n=1 Tax=Azospirillum brasilense Sp245 RepID=G8B0X9_AZOBR
permease of the major facilitator superfamily
Permease of the major facilitator superfamily {ECO:0000313|EMBL:CCD03838.1}; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;"
13_1_40cm_4_scaffold_247_24
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

16799..17920
DNA (1122bp) protein (374aa)
Beta-lactamase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQP6_9BACT
Beta-lactamase {ECO:0000313|EMBL:EEF57828.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" so
beta-lactamase
13_1_40cm_4_scaffold_247_25
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

18033..18548
DNA (516bp) protein (172aa)
carbonic anhydrase; K01673 carbonic anhydrase [EC:4.2.1.1] id=14424554 bin=bin1_lowGC species=Mycobacterium hassiacum genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin1_lowGC organism_group=Unknown_CP
carbonic anhydrase; K01673 carbonic anhydrase [EC:4.2.1.1] Tax=CSP1_2_Dadabacteria
carbonic anhydrase
13_1_40cm_4_scaffold_247_26
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(18535..19020)
DNA (486bp) protein (162aa)
Methylated-DNA--protein-cysteine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00772}; EC=2.1.1.63 {ECO:0000256|HAMAP-Rule:MF_00772};; 6-O-methylguanine-DNA methyltransferase {ECO:0000256|HAMAP-Rule:MF
Methylated-DNA--protein-cysteine methyltransferase n=1 Tax=Reinekea blandensis MED297 RepID=A4B9J5_9GAMM
Methylated-DNA--protein-cysteine methyltransferase
13_1_40cm_4_scaffold_247_27
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(19023..19532)
DNA (510bp) protein (170aa)
Putative uncharacterized protein n=1 Tax=Planctomyces brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448) RepID=F0SGK2_PLABD id=5225220 bin=16ft_combo_ws3_JS1 species=Planctomyces brasiliensis genus=Planctomyces taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
hypothetical protein
13_1_40cm_4_scaffold_247_28
unknown

Not on your lists

comp(19544..19690)
DNA (147bp) protein (49aa)

This feature has no annotations

Displaying 28 items

View Taxonomy