ggKbase home page

13_1_40cm_4_scaffold_2536

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_2536_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

1..354
DNA (354bp) protein (118aa)
Zinc-dependent amidohydrolase, putative id=2773049 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Pm20d; peptidase M20 domain-containing protein 2 (Aminoacylase 1-like protein 2) Tax=GWA2_Rokubacteria_73_35_curated
amidohydrolase
13_1_40cm_4_scaffold_2536_2
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

379..927
DNA (549bp) protein (183aa)
sodC; Cu,Zn superoxide dismutase (SOD), periplasmic (EC:1.15.1.1); K04565 Cu/Zn superoxide dismutase [EC:1.15.1.1] id=14626963 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
sodC; Cu,Zn superoxide dismutase (SOD), periplasmic (EC:1.15.1.1); K04565 Cu/Zn superoxide dismutase [EC:1.15.1.1] Tax=CSP1_6_Rokubacteria
sodC; Cu,Zn superoxide dismutase (SOD), periplasmic (EC:1.15.1.1)
13_1_40cm_4_scaffold_2536_3
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(1100..1519)
DNA (420bp) protein (140aa)
Uncharacterized protein, possibly involved in aromatic compounds catabolism id=3428359 bin=GWF2_Methylomirabilis_70_14 species=Beggiatoa alba genus=Beggiatoa taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
hypothetical protein
13_1_40cm_4_scaffold_2536_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1531..2112)
DNA (582bp) protein (194aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=2773052 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_2536_5
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2129..2728)
DNA (600bp) protein (200aa)
Transcriptional regulator, TetR family n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TRJ5_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:ETX00824.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
Regulatory protein betI
13_1_40cm_4_scaffold_2536_6
Candidatus Acetothermus autotrophicum, Candidatus Acetothermum, Acetothermia, Bacteria

Not on your lists

comp(2725..3279)
DNA (555bp) protein (185aa)
hypothetical protein n=1 Tax=Fervidibacteria bacterium SCGC AAA471-D06 RepID=UPI00037BBC63
Hypothetical conserved protein {ECO:0000313|EMBL:BAL60101.1}; TaxID=1446466 species="Bacteria; Acetothermia; Candidatus Acetothermum.;" source="Candidatus Acetothermus autotrophicum.;"
hypothetical protein
13_1_40cm_4_scaffold_2536_7
Geobacter bemidjiensis, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3293..3520)
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) RepID=B5EGQ5_GEOBB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACH39538.1}; TaxID=404380 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter bemidjien
13_1_40cm_4_scaffold_2536_8
RBG_13_Actinobacteria_63_9_curated, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3722..3994)
DNA (273bp) protein (91aa)
hypothetical protein Tax=RBG_13_Actinobacteria_63_9_curated
Putative uncharacterized protein id=4561174 bin=GWC2_Syntrophus__56_31 species=uncultured marine bacterium Ant4E12 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
hypothetical protein
13_1_40cm_4_scaffold_2536_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4162..5742)
DNA (1581bp) protein (527aa)
putative thymidylate synthase (EC:2.1.1.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
putative thymidylate synthase (EC:2.1.1.-)
Thymidylate synthase complementing protein ThyX id=2773055 bin=GWA2_Methylomirabilis_73_35 species=Ilumatobacter coccineus genus=Ilumatobacter taxon_order=Acidimicrobiales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_2536_10
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(5753..6073)
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=Desulfurispora thermophila RepID=UPI000379713D
Branched-chain amino acid transport Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
hypothetical protein
13_1_40cm_4_scaffold_2536_11
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(6070..6693)
DNA (624bp) protein (208aa)
AzlC family protein n=1 Tax=Desulfotomaculum reducens (strain MI-1) RepID=A4J7M5_DESRM
AzlC family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
AzlC family protein
13_1_40cm_4_scaffold_2536_12
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(6759..7814)
DNA (1056bp) protein (352aa)
Putative cyclase id=3202117 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
cyclase Tax=GWC2_Rokubacteria_70_16_curated
cyclase
13_1_40cm_4_scaffold_2536_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7819..8184)
DNA (366bp) protein (122aa)
cupin Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Cupin_2 domain containing protein id=2773060 bin=GWA2_Methylomirabilis_73_35 species=Pyrobaculum sp. 1860 genus=Pyrobaculum taxon_order=Thermoproteales taxon_class=Thermoprotei phylum=Crenarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Cupin 2 conserved barrel domain protein
13_1_40cm_4_scaffold_2536_14
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

8474..8944
DNA (471bp) protein (157aa)
Luciferase family protein id=4478147 bin=GWC2_Methylomirabilis_70_24 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Luciferase-like, subgroup Tax=GWA2_Rokubacteria_70_23_curated
luciferase-like monooxygenase
13_1_40cm_4_scaffold_2536_15
R_NC10_66_22, NC10, Bacteria

Not on your lists

8941..9396
DNA (456bp) protein (152aa)
Luciferase-like, subgroup Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
Luciferase family protein id=2817356 bin=GWC2_Methylomirabilis_70_16 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
luciferase-like protein
13_1_40cm_4_scaffold_2536_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

9848..10531
DNA (684bp) protein (228aa)
dihydroorotate dehydrogenase Tax=GWA2_Rokubacteria_73_35_curated
Putative uncharacterized protein id=2773068 bin=GWA2_Methylomirabilis_73_35 species=Planctomyces maris genus=Planctomyces taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_2536_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

10561..11028
DNA (468bp) protein (156aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=2817611 bin=GWC2_Methylomirabilis_70_16 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_2536_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

10983..11642
DNA (660bp) protein (220aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
id=14626720 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_2536_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

11675..12625
DNA (951bp) protein (317aa)
threonine synthase; K01733 threonine synthase [EC:4.2.3.1] Tax=GWA2_Rokubacteria_73_35_curated
Threonine synthase ThrC id=4165888 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
threonine synthase
13_1_40cm_4_scaffold_2536_20
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

12625..13254
DNA (630bp) protein (210aa)
DNA-3-methyladenine glycosylase; K03652 DNA-3-methyladenine glycosylase [EC:3.2.2.21] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative 3-methyladenine DNA glycosylase id=2773084 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DNA-3-methyladenine glycosylase
13_1_40cm_4_scaffold_2536_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13196..13846)
DNA (651bp) protein (217aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=2773093 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_2536_22
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

14047..14769
DNA (723bp) protein (241aa)
tolQ; TolQ protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
TolQ protein id=4489421 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
flagellar motor protein MotA
13_1_40cm_4_scaffold_2536_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14759..15187
DNA (429bp) protein (143aa)
tolR; protein TolR; K03560 biopolymer transport protein TolR Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
tolR; protein TolR; K03560 biopolymer transport protein TolR id=14626726 bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
exbD; Biopolymer transport protein exbD
13_1_40cm_4_scaffold_2536_24
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

15661..15990
DNA (330bp) protein (110aa)
putative periplasmic protein TonB; K03832 periplasmic protein TonB Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
TonB family protein id=4034141 bin=GWA2_Methylomirabilis_73_35 species=Synechococcus sp. genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative periplasmic protein TonB
13_1_40cm_4_scaffold_2536_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15998..17329
DNA (1332bp) protein (444aa)
tolB protein; K03641 TolB protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Protein TolB id=4830641 bin=GWC2_Methylomirabilis_70_16 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
biopolymer transport TolB-like protein
13_1_40cm_4_scaffold_2536_26
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

17383..17994
DNA (612bp) protein (204aa)
OmpA/MotB domain protein id=4034147 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
OmpA/MotB domain protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
pal; peptidoglycan-associated lipoprotein pal
13_1_40cm_4_scaffold_2536_27
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

18009..18932
DNA (924bp) protein (308aa)
Uncharacterized protein id=4034149 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_4_scaffold_2536_28
unknown

Not on your lists

comp(19079..19495)
DNA (417bp) protein (139aa)

This feature has no annotations

13_1_40cm_4_scaffold_2536_29
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

19708..20295
DNA (588bp) protein (196aa)
hypothetical protein; K07018 id=14626733 bin=bin7_NC10_sister species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein; K07018 Tax=CSP1_6_Rokubacteria
alpha/beta hydrolase
13_1_40cm_4_scaffold_2536_30
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(20254..20823)
DNA (570bp) protein (190aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein id=14626734 bin=bin7_NC10_sister species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Displaying items 1-30 of 43 in total

View Taxonomy